Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01758 ATGGATGAAGTTGAAATTCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACAGGAATCACTTATGATAGGGAGAACATAGAGAAATGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAAGCAGAGCCTACTAGGCCATGATCTCACCCCAAACCACACTCTACGCAGGCTGATCCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAGCGCATTCCAACTCCAAAGTCACCCATTGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGTCTCACAAGGCTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGAGCTGTTTGGAGTCTGCAGGAGTTGTTGAATTCTTAGCCTCAACCATGAAGCACAAGACAGAAGAAAACTCAACTGTTCTTCTCTGTGAAGCAGCTATCGAAGTCTTATTCCACCTTAACCCTTCTGAGGCTCAGCTTAAAGCTCTCATATATAACGAGGGGTTTCAGTTTATTGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCATGCTACTTAGATCAGCACTGGAGGTTGCTGATCCTATCCAACTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTACTTCTTTGTACCTCTGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGCTGCAGGATTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGTGATAGAGGGGTTAGAATTTTTGCCTCCATTTGTAGGTATTCCGCCAATGCCAGAGTGCTTCATGAAATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCGGTTTCAAGACTAGAGAGAGGGCCAAGGAGATACTCAAATTGCATTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTACCTTTGTTATCTTCCTTTCCTTGA 1212 0.4554 MDEVEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQSLLGHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNKSCLESAGVVEFLASTMKHKTEENSTVLLCEAAIEVLFHLNPSEAQLKALIYNEGFQFIESLFHVLRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHAAGLAIVSKKILRVSLVASDRGVRIFASICRYSANARVLHEMLQVGAVSKLCLVLQVNCGFKTRERAKEILKLHSSVWKNSPCIPVPLLSSFP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01758 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Phac5g01758 403 SUPERFAMILY RING/U-box 3 77 - -
Phac5g01758 403 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Phac5g01758 403 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Phac5g01758 403 CDD RING-Ubox_PUB 7 55 IPR045210 -
Phac5g01758 403 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Phac5g01758 403 Gene3D - 95 324 IPR011989 -
Phac5g01758 403 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Phac5g01758 403 SUPERFAMILY ARM repeat 98 381 IPR016024 -
Phac5g01758 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01758 Phac-Chr5 37717940 37720234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01758 2 403 U-box Gene Family AT2G35930 55.419 1.69e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01758 - - gmx:100778012 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01758 5 37717940 37720234 Phac5g01758 5 37717940 37720234 ECH