Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01731 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACAGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGCATTTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAATCGGTTCATTAAAGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACGGCTGCGAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAGTAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 558 0.4373 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQHFSTVAKLQRQHLSVQEACSKELGSSSKCKSFESDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQGDGTQKSNGFY* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01731 185 SUPERFAMILY HMG-box 107 155 IPR036910 -
Phac5g01731 185 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Phac5g01731 185 MobiDBLite consensus disorder prediction 94 117 - -
Phac5g01731 185 MobiDBLite consensus disorder prediction 94 111 - -
Phac5g01731 185 Pfam YABBY protein 7 162 IPR006780 GO:0007275
Phac5g01731 185 Gene3D High mobility group box domain 98 158 IPR036910 -
Phac5g01731 185 CDD HMG-box_SF 116 152 - -
Phac5g01731 185 FunFam Axial regulator YABBY 107 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01731 Phac-Chr5 37558269 37567739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01731 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 64.249 5.12e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phac5g01731 YABBY 5.7e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01731 K25796 - gmx:100785458 330.872