Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01729 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACAGTTAGATGTGGACACTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGAAACTCAGTTACAGAGACAGCACCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAATCGGTTCATTAAAGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCTTTTAGCACGGCTGCGAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAGTAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 537 0.4395 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQETQLQRQHLSVQEACSKELGSSSKCKSFESDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQGDGTQKSNGFY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01729 178 CDD HMG-box_SF 109 145 - -
Phac5g01729 178 Gene3D High mobility group box domain 91 151 IPR036910 -
Phac5g01729 178 MobiDBLite consensus disorder prediction 85 104 - -
Phac5g01729 178 MobiDBLite consensus disorder prediction 81 110 - -
Phac5g01729 178 PANTHER PROTEIN YABBY 6-RELATED 1 165 IPR006780 GO:0007275
Phac5g01729 178 Pfam YABBY protein 7 155 IPR006780 GO:0007275
Phac5g01729 178 SUPERFAMILY HMG-box 100 148 IPR036910 -
Phac5g01729 178 FunFam Axial regulator YABBY 100 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01729 Phac-Chr5 37558269 37567739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01729 1 178 C2C2-YABBY Transcription Factor Family AT1G08465 66.667 7.20e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phac5g01729 YABBY 5.5e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01729 K25796 - gmx:100785458 334.339