Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01723 ATGGAAGGGAATGATATCAATGATGACAGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTTGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGTAGCATATGCCTCGAGGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTGGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCAAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCGACTCATCCTAATTCACCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAACCAACTCCTACAATTGCTGTTTCCAATCTGTCTCCAACTCATGCAACGGGAGAACAATCATCACAAGTGACTTTGGTTGCTCCGGTTCAAGCAGAACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGGTACAGATCATCAGGGATCATCTTACAGCAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAGTCTCTGAAATCGAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGTACAAGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGGCTGGAGACCAGAGACAGTAATAGAAGCAATAGTAATTCAGCTCCAAGTAATTTAGAGGATGGTTCAGTTCAAGCACCTAATGATCAGCCTTTAGCTGGCACTGAAGGGGGTAGTCTTTTGGGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAATTAA 1179 0.4512 MEGNDINDDSNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEPTPTIAVSNLSPTHATGEQSSQVTLVAPVQAEQVSASGSGSTALGTDHQGSSYSNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSNRSNSNSAPSNLEDGSVQAPNDQPLAGTEGGSLLGDNNTKASCAAGSSSN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01723 392 FunFam E3 ubiquitin-protein ligase RHF2A 7 110 - -
Phac5g01723 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 85 IPR013083 -
Phac5g01723 392 MobiDBLite consensus disorder prediction 374 392 - -
Phac5g01723 392 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Phac5g01723 392 MobiDBLite consensus disorder prediction 152 276 - -
Phac5g01723 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 85 - -
Phac5g01723 392 MobiDBLite consensus disorder prediction 179 276 - -
Phac5g01723 392 CDD RING-H2_RHF2A 23 85 - -
Phac5g01723 392 MobiDBLite consensus disorder prediction 334 392 - -
Phac5g01723 392 MobiDBLite consensus disorder prediction 343 367 - -
Phac5g01723 392 SMART ring_2 36 76 IPR001841 -
Phac5g01723 392 Pfam Ring finger domain 35 76 IPR001841 -
Phac5g01723 392 SUPERFAMILY RING/U-box 29 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01723 Phac-Chr5 37518248 37523076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01723 33 76 C3H Transcription Factor Family AT5G15790 50.000 5.00e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01723 K19043 - gmx:100814908 675.626