Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01720 ATGCCACGTGTCGGAAACACAGAGAGTGGTGGACGAAGACCGAGCGAGCTAAGGGTTTTCTTCCAATCGCATCTCCAATCTCGATTGGGCTACCTCATCGCGCAATTCTCCATGGAGGGTGCTGGGATGGAAGGGAATGATATCAATGATGACAGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTTGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGTAGCATATGCCTCGAGGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCACGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTGGCTGCTGCAGCAGCAATGGGAAGAGCACGCCACATTGCAAGAAGGGAAGGTCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCGACTCATCCTAATTCACCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAACCAACTCCTACAATTGCTGTTTCCAATCTGTCTCCAACTCATGCAACGGGAGAACAATCATCACAAGTGACTTTGGTTGCTCCGGTTCAAGCAGAACAGGTTTCTGCTTCAGGATCTGGATCTACTGCTCTTGGTACAGATCATCAGGGATCATCTTACAGCAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAGTCTCTGAAATCGAAACTGAATGCTGTGTCAACAAGATACAAGGAGTCAATTTCCAAGAGTACAAGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGGCTGGAGACCAGAGACAGTAATAGAAGCAATAGTAATTCAGCTCCAAGTAATTTAGAGGATGGTTCAGTTCAAGCACCTAATGATCAGCCTTTAGCTGGCACTGAAGGGGGTAGTCTTTTGGGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAATTAA 1305 0.4605 MPRVGNTESGGRRPSELRVFFQSHLQSRLGYLIAQFSMEGAGMEGNDINDDSNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEPTPTIAVSNLSPTHATGEQSSQVTLVAPVQAEQVSASGSGSTALGTDHQGSSYSNRRSPNQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSNRSNSNSAPSNLEDGSVQAPNDQPLAGTEGGSLLGDNNTKASCAAGSSSN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01720 434 Pfam Ring finger domain 77 118 IPR001841 -
Phac5g01720 434 MobiDBLite consensus disorder prediction 221 318 - -
Phac5g01720 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 127 IPR013083 -
Phac5g01720 434 SMART ring_2 78 118 IPR001841 -
Phac5g01720 434 MobiDBLite consensus disorder prediction 385 409 - -
Phac5g01720 434 SUPERFAMILY RING/U-box 71 126 - -
Phac5g01720 434 MobiDBLite consensus disorder prediction 376 434 - -
Phac5g01720 434 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 52 127 - -
Phac5g01720 434 MobiDBLite consensus disorder prediction 416 434 - -
Phac5g01720 434 ProSiteProfiles Zinc finger RING-type profile. 78 118 IPR001841 -
Phac5g01720 434 CDD RING-H2_RHF2A 65 127 - -
Phac5g01720 434 MobiDBLite consensus disorder prediction 194 318 - -
Phac5g01720 434 FunFam E3 ubiquitin-protein ligase RHF2A 49 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01720 Phac-Chr5 37518248 37523076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01720 75 118 C3H Transcription Factor Family AT5G15790 50.000 5.62e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01720 K19043 - gmx:100814908 685.641