Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01694 ATGATTCCACCAGTATTGGTTCCATCTTCTTTTAAGGGAACTAAGAAGAGGAAATATACAAGAAAAGGAACTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAAATGGATTGATCAACATATATTAGAAGATGTTGACTTAGATAATCAGAGTGAAGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTAAGATACCAGAGGGAATGGTTAGCTTGGGCTTTGAAACAAGAACATTCTTTGAGTAGAGGTGGAATACTTGCAGACGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCCAAGACATTTGTGAACCAGATCAATCCATACCATGTTCATCCAGCCTGTCTGCAATTAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTTTATCACGGGGCTAATAGAGGGAGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGTCCATATTGTGGAAAATTATTTTTGCCGAGTAAGTTGATGTATCATCAAAACTATTTTTGTGGACCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGAGAAGTTACTAAAGGGAAGAGCAAGGAATGTGACAGTAGAAAGATTTTGAAGGGTTCTATCAAGGAAAAGGGAGACAAAATGTGCATAGATATGGAAGATTCTGATGCTGTACCTGTGCGTAGCGATAAGTCATTTCTCCATGCTGTGAAATGGCAAAGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCAACCTACAAATGGGCGTTGAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATAAGATTCCTGCAAATAACTCCTTATTCTTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCACAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAATAAATACGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCTTTGAGAAAGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACTCTGATGCATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTCGTGGTATATTCTCAAAGTTCTGGTTCAAGAAGTGCAGTTATGGCCAATAATGCAACTACTGTTGAGCAAATTTGTGGTATTTGCCATGAGCCTATAGAAGACCTTGTTGTTACCTCCTGTGAGCATTCATTTTGCCGGGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCTGCGTGCTCTAAATTACTTACAGTTGATTTAACACCCAACAAGGATGTTGGGGATCAGGCTAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACGAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGACTGCTAGGGATGCTGCCATTCGGAGATTCACTGAAGATCCAGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATAGGTGGGTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTCACCTAA 2352 0.4077 MIPPVLVPSSFKGTKKRKYTRKGTKGDSRPVLLWNAWEEEQEKWIDQHILEDVDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSLSRGGILADEMGMGKTIQAIALVLAKREFQDICEPDQSIPCSSSLSAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPDAVRTEKQSKQAKKKREVTKGKSKECDSRKILKGSIKEKGDKMCIDMEDSDAVPVRSDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMANNATTVEQICGICHEPIEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTPNKDVGDQAKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLTARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01694 783 ProSiteProfiles Zinc finger RING-type profile. 529 570 IPR001841 -
Phac5g01694 783 SMART helicmild6 644 727 IPR001650 -
Phac5g01694 783 Pfam SNF2-related domain 91 505 IPR000330 GO:0005524|GO:0140658
Phac5g01694 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 430 IPR027417 -
Phac5g01694 783 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 20 781 - -
Phac5g01694 783 ProSitePatterns Zinc finger RING-type signature. 544 553 IPR017907 -
Phac5g01694 783 SMART ring_2 529 569 IPR001841 -
Phac5g01694 783 CDD DEXDc_SHPRH-like 76 373 - -
Phac5g01694 783 SMART ultradead3 72 363 IPR014001 -
Phac5g01694 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 773 IPR001650 -
Phac5g01694 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 358 IPR014001 -
Phac5g01694 783 Pfam Helicase conserved C-terminal domain 613 727 IPR001650 -
Phac5g01694 783 Gene3D - 233 450 IPR038718 -
Phac5g01694 783 Gene3D - 78 213 IPR038718 -
Phac5g01694 783 SUPERFAMILY RING/U-box 524 574 - -
Phac5g01694 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 781 IPR027417 -
Phac5g01694 783 Gene3D - 452 781 IPR027417 -
Phac5g01694 783 CDD SF2_C_SNF 611 738 - -
Phac5g01694 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 522 596 IPR013083 -
Phac5g01694 783 Pfam Zinc finger, C3HC4 type (RING finger) 529 569 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01694 Phac-Chr5 37287136 37294499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01694 2 783 RAD5 or RAD16-like Gene Family AT1G05120 66.962 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac5g01694 SNF2_N 3e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01694 K15083 - gmx:100798333 1400.57