Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01658 ATGAGAGTTGCTATTGTCACAAGAGCAAACCAATTTTTCATTGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAGGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTTTCAGTTACTGGGTGGGAACTAGTTGATGGATTAGACATGGATGATTATCCAATAGTCACTGAAGGTACAAAAATTGACCTCACCATCAAACCAGTAGAGCCACACCCTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAAAAAGCTCAACATTGAGGTGGACAGAACTGACACTGTTCGCAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTCTACTTTTCAGGGACTGAACTGGATGAAGATTTTAGAACCTTAAGTGAATACAGCATTCGCGAATTTTCTGAAATTGTTGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACAAGGAAGTTAAGCTTGGTTGTACAAACTTCCTCTAGCTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGAGATGCAAACACAGTGAATGACTTGAAGCAGTTACTGATAAGCAGAAAGATTCTGCCTGCTGATGACTATTTGTTTATACACAGGCAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGGACAGTTAGCAGTAGTGGATATGCATGA 750 0.412 MRVAIVTRANQFFIEVGAQETVVAIKRKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPVEPHPNKMQITVKFSAKKLNIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYSIREFSEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKQLLISRKILPADDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSSSGYA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01658 249 ProSiteProfiles Ubiquitin domain profile. 166 238 IPR000626 GO:0005515
Phac5g01658 249 CDD Ubl_ubiquitin_like 181 239 - -
Phac5g01658 249 PANTHER UV EXCISION REPAIR PROTEIN RAD23 81 153 - -
Phac5g01658 249 SUPERFAMILY Ubiquitin-like 177 242 IPR029071 -
Phac5g01658 249 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Phac5g01658 249 Gene3D - 80 152 - -
Phac5g01658 249 Gene3D - 1 72 - -
Phac5g01658 249 Pfam Ubiquitin family 177 238 IPR000626 GO:0005515
Phac5g01658 249 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Phac5g01658 249 Pfam Ubiquitin family 83 153 IPR000626 GO:0005515
Phac5g01658 249 SMART ubq_7 81 152 IPR000626 GO:0005515
Phac5g01658 249 SMART ubq_7 1 72 IPR000626 GO:0005515
Phac5g01658 249 SMART ubq_7 166 241 IPR000626 GO:0005515
Phac5g01658 249 Gene3D - 154 245 - -
Phac5g01658 249 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Phac5g01658 249 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Phac5g01658 249 SUPERFAMILY Ubiquitin-like 73 160 IPR029071 -
Phac5g01658 249 CDD Ubl_ubiquitin_like 83 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01658 81 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 5.35e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01658 - - gmx:100781557 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01658 5 36779446 36780195 Phac5g01658 5 36779446 36780195 ECH