Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01598 ATGGACGAAGAAAAGCAACGAAGTGTGCCGGTTCTGCCGTGGATGCGCCACCCTGTCGACATCACTCGCTATGAACAACTCTCCCTCCGCAGGGTTCCTCTCCTGGACCGTCGGTTAAAGTTGGCACTAGAGAACATGGAAATCTCGAACTTGTTCCCAGTTCAAGTTGCGATTTGGCAAGAGATCATTGGACCAGGTTTCTTTGAGCGAGACCTTTGTATAAACTCGCCCACAGGAAGTGGCAAAACCTTGGCCTATGCACTTCCCATCGTGCAAAAGGTTAAACAGGTTTTTGATGCTATTGCATTGCCAGTAGGCCTGCGTGTGGGCTTGGCTGTTGGTCAATCTTCGGTTGCTGATGAGATTTCTAATCTCGTTTACCTACCGGGGGAAGATGAGGATTCAGATCTTGGGTTTTTCTCTTCATTCTGGTTTCAAAGTAAGGTGGACATATTGGTGGCAACCCCCGGAAGGCTTGTGGACCATGTCCACTTGTCTAGGGGTTTCACATTGAAGCATCTCCATTATCTTGTAGTTGATGAAGCAGATTGGTTGCTCCGGGAGGACTATCAGTCCTGGTTACCCACTGTACTTAGGTCCACCCAATCTAGCAACAATGATGATGGTGGTGTCCCTTTTTCTCCCTGGAACATGATCTGTGAAAGAAAGGTCAAATCCCTGTACTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGACTCAACACATCGTCTATGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGACATCAAGGAGTATTCTGGTCATCAACATCAACGAGTAAGAAGCAAGACACTGAATGAGTTTCGAAAAGGGCAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTAGGGGAATGGATGAAGGGGTAAGAAATGTTATTAACTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCAAGAGCAAGTCAGACTGGGCGTTGCTTCACATTGATGTCAAACGATGAGGTATGA 1050 0.4562 MDEEKQRSVPVLPWMRHPVDITRYEQLSLRRVPLLDRRLKLALENMEISNLFPVQVAIWQEIIGPGFFERDLCINSPTGSGKTLAYALPIVQKVKQVFDAIALPVGLRVGLAVGQSSVADEISNLVYLPGEDEDSDLGFFSSFWFQSKVDILVATPGRLVDHVHLSRGFTLKHLHYLVVDEADWLLREDYQSWLPTVLRSTQSSNNDDGGVPFSPWNMICERKVKSLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGHQHQRVRSKTLNEFRKGQFQVLVSSDAMTRGMDEGVRNVINYDMPKYIKTYVHRAGRTARASQTGRCFTLMSNDEV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01598 349 Pfam DEAD/DEAH box helicase 53 205 IPR011545 GO:0003676|GO:0005524
Phac5g01598 349 Gene3D - 95 214 IPR027417 -
Phac5g01598 349 SMART ultradead3 47 287 IPR014001 -
Phac5g01598 349 SMART helicmild6 252 335 IPR001650 -
Phac5g01598 349 Gene3D - 216 349 IPR027417 -
Phac5g01598 349 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 228 349 IPR001650 -
Phac5g01598 349 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 266 IPR014001 -
Phac5g01598 349 CDD SF2_C_DEAD 218 343 - -
Phac5g01598 349 Pfam Helicase conserved C-terminal domain 226 334 IPR001650 -
Phac5g01598 349 Gene3D - 17 94 IPR027417 -
Phac5g01598 349 PANTHER RNA HELICASE 35 201 - -
Phac5g01598 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01598 Phac-Chr5 36073453 36081238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01598 57 349 Eukaryotic Initiation Factors Gene Family AT3G19760 22.350 1.69e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01598 K14807 - gmx:100789424 482.641