Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01581 ATGGCAGATGGAAAAACGTTCAAGAAGCTTTGTCATCCTTACAAGAAAGAGCGTCTAGACGCGAAGCTGAAGCTGGTGGGAAAGTATGGGTTGCGATGCAAGAGGGAGCTGTGGAGGGTTCAATACGCCCTCAGCCGCCTCCGCAACAACGCACGTAACCTCCTCACTCTCGACGAGAAGAACCTGCACCGGATCTTTGAGGGCGAGACTCTCCTCCGCCGCATGTTTCGCTACGGTCTCCTTGACGAGACCTAG 255 0.5451 MADGKTFKKLCHPYKKERLDAKLKLVGKYGLRCKRELWRVQYALSRLRNNARNLLTLDEKNLHRIFEGETLLRRMFRYGLLDET* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01581 84 SMART Ribosomal_S4_2 4 82 IPR001912 GO:0019843
Phac5g01581 84 SUPERFAMILY Alpha-L RNA-binding motif 12 81 - -
Phac5g01581 84 Pfam Ribosomal protein S4/S9 N-terminal domain 11 80 IPR001912 GO:0019843
Phac5g01581 84 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 83 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01581 Phac-Chr5 35638937 35639191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01581 4 84 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 82.716 5.62e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01581 K02997 - gmx:100810569 138.658