Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01500 ATGACTTTGTTCTGGATGCAGTTTCGTTTTTATTTAAAACTTGTAATTTCAAGTAGTTTTTTCCATATACCTGTTTCTCTAGACCTTTTAGATCCTATTGTATTGACGAAACTTTATTTATGGATTGTGGATTACCTATTAGCAGCCACTTACTATTCGTGCACTTTGTTTTTCCAGATTCAGACACACTTCACAGAACACTTTGCACAAGACAAAAGAGACATGGCCTTAGACCATTTCGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATAAATCATCTCACGAAACATGGAAATGTGCTGGTGATGATGATAGTGCAGATTCGGATAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCGTAGTGCCTCCTCTGAAAATGAAGAGAACCAACAATGTCCAGTATGCAAATCAGAAATCTCAGAGTCATCACTTGTTCCACTATATGGCCCTGACCGAACCACACTACCTTCTAAAGGCAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACATGATTCTGAAACTGTTTCCCGACATACTTCTCATGTTTATCACCGCCATTATCCGAATCATCCTCAACAGTTCAACTCAATTTCTGGCAGTTACCCTTCATCAATGTTCAACACTGGTGGTTCACTAGCTAATGCATTTGATACAACATATGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACGTATACACATACCCGAATTCATATGATCTTTCAGGGTACAGTAATCCAAGGGTCAGAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCATAGTTTTTTGTCTTCTCTTATTCTGA 996 0.4056 MTLFWMQFRFYLKLVISSSFFHIPVSLDLLDPIVLTKLYLWIVDYLLAATYYSCTLFFQIQTHFTEHFAQDKRDMALDHFEDVVPQLDSFEDKSSHETWKCAGDDDSADSDKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFRSASSENEENQQCPVCKSEISESSLVPLYGPDRTTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSHDSETVSRHTSHVYHRHYPNHPQQFNSISGSYPSSMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNVYTYPNSYDLSGYSNPRVRRHLMQVDRSLNRITFFLLCCIVFCLLLF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01500 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 91 329 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac5g01500 331 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Phac5g01500 331 SUPERFAMILY RING/U-box 116 179 - -
Phac5g01500 331 Pfam Zinc finger, C3HC4 type (RING finger) 120 166 IPR018957 GO:0046872
Phac5g01500 331 SMART ring_2 120 166 IPR001841 -
Phac5g01500 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 180 IPR013083 -
Phac5g01500 331 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 103 180 - -
Phac5g01500 331 ProSiteProfiles Zinc finger RING-type profile. 120 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01500 Phac-Chr5 34920418 34923061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01500 104 331 C3H Transcription Factor Family AT4G28270 35.169 1.47e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01500 K10666 - gmx:100785491 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01500 5 34920418 34923061 Phac5g01500 5 34920418 34923061 ECH
Phac11g00247 11 1511288 1514944 Phac5g01500 5 34920418 34923061 PCT