Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01499 ATGGCCTTAGACCATTTCGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATAAATCATCTCACGAAACATGGAAATGTGCTGGTGATGATGATAGTGCAGATTCGGATAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCGTAGTGCCTCCTCTGAAAATGAAGAGAACCAACAATGTCCAGTATGCAAATCAGAAATCTCAGAGTCATCACTTGTTCCACTATATGGCCCTGACCGAACCACACTACCTTCTAAAGGCAAAGGTCACCAAGTAGGGATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCATCAAGATCACATGATTCTGAAACTGTTTCCCGACATACTTCTCATGTTTATCACCGCCATTATCCGAATCATCCTCAACAGTTCAACTCAATTTCTGGCAGTTACCCTTCATCAATGTTCAACACTGGTGGTTCACTAGCTAATGCATTTGATACAACATATGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACGTATACACATACCCGAATTCATATGATCTTTCAGGGTACAGTAATCCAAGGGTCAGAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCATAGTTTTTTGTCTTCTCTTATTCTGA 774 0.4251 MALDHFEDVVPQLDSFEDKSSHETWKCAGDDDSADSDKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFRSASSENEENQQCPVCKSEISESSLVPLYGPDRTTLPSKGKGHQVGIVIPRRPLGPSWLTNSSRSHDSETVSRHTSHVYHRHYPNHPQQFNSISGSYPSSMFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNVYTYPNSYDLSGYSNPRVRRHLMQVDRSLNRITFFLLCCIVFCLLLF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01499 257 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Phac5g01499 257 ProSiteProfiles Zinc finger RING-type profile. 46 93 IPR001841 -
Phac5g01499 257 SMART ring_2 46 92 IPR001841 -
Phac5g01499 257 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 106 - -
Phac5g01499 257 SUPERFAMILY RING/U-box 42 105 - -
Phac5g01499 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 106 IPR013083 -
Phac5g01499 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 255 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac5g01499 257 Pfam Zinc finger, C3HC4 type (RING finger) 46 92 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01499 Phac-Chr5 34920170 34923061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01499 30 257 C3H Transcription Factor Family AT4G28270 35.443 3.92e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01499 K10666 - gmx:100785491 399.053