Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01478 ATGGTTGCCACTCAAAGACTGCAGTTTTCTTTGTGGAAGAGGAGGAGGGGGCTTGGATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGACGAGCTGTTTACCAGAAAGGACGAGAGCAATTTAGGCCCATTTTCACAGTGGAACATAACAGGAACTTACAAAGGGAATTGGAAATTTTTGGATACAACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGCAATTCTGTAATTGAGTTAATCACTACTCCTACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTACAAGATTCTTCGCGAGATAAAATGTGGAGAAGGAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATTGAAATTGCTGCTCAGATTTCACGCTTGCCATCATCAAATAACGAAGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGCCCCTCTGCGGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGGTGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAAGTTTCAATACTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTGCATCTCACTGCAGGAATACTAGTTGAATCATTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTCTTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGCAAACCATTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGTATAGAGCCAGACAAGACCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACATGCTACAGACTGTGTGATTTGCATGACAGCCATTGATATTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGGCCATTACCCCCTGCCTAG 1710 0.4111 MVATQRLQFSLWKRRRGLGFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDELFTRKDESNLGPFSQWNITGTYKGNWKFLDTTNGSSRFPDIRKTNGNSVIELITTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQISRLPSSNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLVVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPLLLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKTWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRHATDCVICMTAIDISQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01478 569 FunFam E3 ubiquitin-protein ligase, putative 505 569 - -
Phac5g01478 569 CDD RING-H2_TUL1-like 513 568 - -
Phac5g01478 569 PANTHER RING ZINC FINGER PROTEIN 117 568 - -
Phac5g01478 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Phac5g01478 569 SUPERFAMILY RING/U-box 503 568 - -
Phac5g01478 569 Pfam Ring finger domain 518 563 IPR001841 -
Phac5g01478 569 SMART ring_2 519 562 IPR001841 -
Phac5g01478 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 569 IPR013083 -
Phac5g01478 569 SMART ringv_2 518 563 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01478 Phac-Chr5 34616941 34627806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01478 510 567 C3H Transcription Factor Family AT1G53010 30.508 2.39e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01478 K23788 - gmx:100780140 1082.78