Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01477 ATGGTTGCCACTCAAAGACTGCAGTTTTCTTTGTGGAAGAGGAGGAGGGGGCTTGGATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGACGAGCAGCTGTTTACCAGAAAGGACGAGAGCAATTTAGGCCCATTTTCACAGTGGAACATAACAGGAACTTACAAAGGGAATTGGAAATTTTTGGATACAACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGCAATTCTGTAATTGAGTTAATCACTACTCCTACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAATCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTCGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTACAAGATTCTTCGCGAGATAAAATGTGGAGAAGGAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATTGAAATTGCTGCTCAGATTTCACGCTTGCCATCATCAAATAACGAAGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGCCCCTCTGCGGATGATGATGGGGACTGCTTCTCACCATTACTGTTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGGTGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAAGTTTCAATACTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTGCATCTCACTGCAGGAATACTAGTTGAATCATTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTCTTCTTCTTCTTATGTACTCTTTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGCAAACCATTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGTATAGAGCCAGACAAGACCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACATGCTACAGACTGTGTGATTTGCATGACAGCCATTGATATTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGGCCATTACCCCCTGCCTAG 1713 0.4116 MVATQRLQFSLWKRRRGLGFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDEQLFTRKDESNLGPFSQWNITGTYKGNWKFLDTTNGSSRFPDIRKTNGNSVIELITTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQIRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQISRLPSSNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLVVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPLLLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKTWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRHATDCVICMTAIDISQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01477 570 FunFam E3 ubiquitin-protein ligase, putative 506 570 - -
Phac5g01477 570 PANTHER RING ZINC FINGER PROTEIN 118 569 - -
Phac5g01477 570 SUPERFAMILY RING/U-box 504 569 - -
Phac5g01477 570 Pfam Ring finger domain 519 564 IPR001841 -
Phac5g01477 570 CDD RING-H2_TUL1-like 514 569 - -
Phac5g01477 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
Phac5g01477 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Phac5g01477 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Phac5g01477 570 SMART ring_2 520 563 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01477 Phac-Chr5 34616941 34627806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01477 511 568 C3H Transcription Factor Family AT1G53010 30.508 2.39e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01477 K23788 - gmx:100780140 1086.63