Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01475 ATGGAGGGGTTGAAGAGGGGTGTGGTAGATTGTGGTGAAAACCAAAAAGGGTACGTGGAGCTTCCGGAGGAGAAGAAGAAGAAGAAGAGAGGGGAGGAAGGGAAGAAAGGAGGTGCTGGTATTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAGGCTAAGCAATACCACAGGAGGCACAAGGTGTGTGAGTGTCACGCCAAGGCTCAGGTTGTGCTTGTTCATGGCATCAAACAACGGTTCTGTCAGCAATGTAGCAGATTCCACGAGCTGTCTGAATTTGATGACGCAAAAAGAAGTTGTCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTTCTGATCAATCTGAAGCAGAAGGGTCAAGCCACAAAGGGTCAGAGGCCCCTCAACTGAAGGACATTGCTTGTGGTCAGGCTAATGAAAGGGGAAGAACTCATATAACGATACAACAAAATTCAGCTTACAAAAATTTCCAAATAAGATAA 513 0.4737 MEGLKRGVVDCGENQKGYVELPEEKKKKKRGEEGKKGGAGIGMLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQVVLVHGIKQRFCQQCSRFHELSEFDDAKRSCRRRLAVHNERRRKNSSDQSEAEGSSHKGSEAPQLKDIACGQANERGRTHITIQQNSAYKNFQIR* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01475 170 Gene3D - 38 107 IPR036893 GO:0003677|GO:0005634
Phac5g01475 170 MobiDBLite consensus disorder prediction 116 130 - -
Phac5g01475 170 Pfam SBP domain 46 119 IPR004333 GO:0003677
Phac5g01475 170 SUPERFAMILY SBT domain 44 124 IPR036893 GO:0003677|GO:0005634
Phac5g01475 170 ProSiteProfiles Zinc finger SBP-type profile. 43 120 IPR004333 GO:0003677
Phac5g01475 170 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 132 IPR044817 GO:0003677
Phac5g01475 170 MobiDBLite consensus disorder prediction 113 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01475 Phac-Chr5 34588126 34590717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01475 40 134 SBP-box Gene Family AT1G53160 64.211 5.52e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac5g01475 SBP 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01475 - - vum:124838879 283.108