Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01471 ATGCCTGCCCAGAAGCGCTCCCTCCCCGACCCACTCGACGAAGGGGACACTTCGCACCAAAACCTCTTCCATTCTCGACATGCGAAGCACCAACAGCAACAACATCAGGACCAGTCGCACGAACACGACGGGGATCACCACCATGAAGAGGAGGAACAAGAGGAAGAAGAAGAAGGGGAAGGAGAAGAAGAAGAAGAAGATGATGATGATGAAGAAGAAGAAGACGAAGAACTAGAAGAAGCGGCGCATGATAACGACGGCAAGGAAACGCCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCTGAATTCGTGTATGTGGAACTTCTCGAAATACGTAAAGATGTTCAATGTCCAATCTGCCTTGGCATTATCAAGAAGACAAGAACTGTCATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCGATGCGACTGGGGAATAATGAATGCCCAGCCTGCCGCACTCATTGTGCCAGTCGCCGTTCGTTGAGGGATGATCCAAATTACGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTATGAAGAGGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATAGCAAAAGTTGTTCAACGGCAATCAGAAGCACTTGTTAAGAGACGCAAAGATACGCCAGGAGTATTTCTAACAAGATCACAGCGTAATCAACGAAACATTCATTCTAGGAGACAAACCCAAGCAATTGAAGGATCGGAAGATAATGAGGAGGAAAATGACAATAACGAAAAGGATTCATCTTCAGCCGATGAACGAAGTACAGAACACAGGCAGAAAAGGCGAAAGAGATGGGCCAGAGTTCGCCCATCTCAACCCTCATCATCCATGGCAAGTCCAGATGGAGGTAATGATAGTGACATGGACATAAGCAGAGAAAATCGTGGAATTTCAAGGCAGGTGTCAAAACCTAGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGAAGTCACACTCGGCATGGAGGTGGTGGTGGTAGCAATAGCAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTTGTTGACCATCTCCGAAGCTTGGATGAAAACACTGATGAGTTTGATGTCCGTCTCATGCTTGTTTCTCTTGATCATCAAAGTACACCAAGTTTGCCGCAACCTTACCTTTGCTGTCGACCAACTTTGTCTGTGGAGCACCTTTACGAAGTAAGATCCTCTTGTCTTTGA 1260 0.4595 MPAQKRSLPDPLDEGDTSHQNLFHSRHAKHQQQQHQDQSHEHDGDHHHEEEEQEEEEEGEGEEEEEDDDDEEEEDEELEEAAHDNDGKETPQDSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGVFLTRSQRNQRNIHSRRQTQAIEGSEDNEEENDNNEKDSSSADERSTEHRQKRRKRWARVRPSQPSSSMASPDGGNDSDMDISRENRGISRQVSKPRKLTWGRGGFRSHTRHGGGGGSNSKSSRSSRLSKFVDHLRSLDENTDEFDVRLMLVSLDHQSTPSLPQPYLCCRPTLSVEHLYEVRSSCL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01471 419 MobiDBLite consensus disorder prediction 311 325 - -
Phac5g01471 419 MobiDBLite consensus disorder prediction 9 23 - -
Phac5g01471 419 Coils Coil 188 219 - -
Phac5g01471 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 185 IPR013083 -
Phac5g01471 419 MobiDBLite consensus disorder prediction 219 359 - -
Phac5g01471 419 MobiDBLite consensus disorder prediction 235 252 - -
Phac5g01471 419 SMART ring_2 122 161 IPR001841 -
Phac5g01471 419 MobiDBLite consensus disorder prediction 1 105 - -
Phac5g01471 419 MobiDBLite consensus disorder prediction 30 49 - -
Phac5g01471 419 Pfam Zinc finger, C3HC4 type (RING finger) 121 161 - -
Phac5g01471 419 Coils Coil 47 81 - -
Phac5g01471 419 PANTHER OS11G0578200 PROTEIN 30 413 IPR044592 -
Phac5g01471 419 SUPERFAMILY RING/U-box 108 176 - -
Phac5g01471 419 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Phac5g01471 419 MobiDBLite consensus disorder prediction 83 105 - -
Phac5g01471 419 CDD RING-HC_RING1-like 119 184 - -
Phac5g01471 419 MobiDBLite consensus disorder prediction 50 82 - -
Phac5g01471 419 ProSiteProfiles Zinc finger RING-type profile. 122 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01471 Phac-Chr5 34559420 34571812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01471 115 185 C3H Transcription Factor Family AT3G23060 35.135 2.33e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01471 K10695 - gmx:100776547 577.785