Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01470 ATGACCAGTGTCTGTGCCGAGCAGCACAAGTTTCACCCCTCTCACCAATTCCTCTCTCCAAAGAAAACCCTCAGAGAGATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCACCGCTGCATGCGCCGGCTCAGACTTGTTCTCAGACGACACCATGCTGCAAAAGTTCCTGCCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCTCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCCCACCCCGGCGAAAAGGCTCGCCGCCGCGACCCTCGGCGGTATCACTACTCGGGAACTGTATGTCCTGATTATCGCCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATACGCTCATGGCGTATTTGAATGCTGGCTGCACCCTGCCAAATACAGGACAGAGGCCTGTAAGGATGGCAAGAACTGCAAGAGAAAGGTGTGTTTCTTTGCACATACACCTCGCCAGCTCAGAATTTTACCGGTAACTTCTCCTTCTTCAGATGACATGTCATGCAAGAAGAGCATTAACAAGCTCTTCAACCATGCTTCAAGATCCAACAACAACTGCTGTTTCTTTTGCCATTGTGTTTCTTCTTCTTCTTCTTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATTTCTCATTACTCGCCACCGCTATCACCATCGTCCTCCTCCTCACCACCTCCTTCTCCTTTGAAATCCCGAAACGGGGTTTCTGTTTCTCCAATTTCCCGATATGGTGCTGCGAATGTAAACCCTCATCATGGGGTGGTTAGTTACAAAGAAGCGTTCGCTGAATTTGTGAACTCCTTGGAGGGTTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAACCATTGAACTTGCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACACCAGCAGCAACAACAACGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCCGCAGCAATTTATTTTTTCACCACCGTCCACTCGGACACCGACAAATGTTAAGTTCTGCAGCAACAGATTCATAGGCAACGACAACAAGGTTGTCGGTGCTGACTCAAATGTCCCAGATCTCGCGTGGGTGAATGAGTTGCTGATGTAG 1182 0.5042 MTSVCAEQHKFHPSHQFLSPKKTLREIDIPPRKLLTRRATAACAGSDLFSDDTMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPDYRRGGCNRGDACEYAHGVFECWLHPAKYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSDDMSCKKSINKLFNHASRSNNNCCFFCHCVSSSSSSSTASPTSTLFNISHYSPPLSPSSSSSPPPSPLKSRNGVSVSPISRYGAANVNPHHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKPLNLPWLDVSLNCEEHQQQQQRQPLIASSFGCEDPQQFIFSPPSTRTPTNVKFCSNRFIGNDNKVVGADSNVPDLAWVNELLM* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01470 393 PANTHER UNKEMPT FAMILY MEMBER 50 392 IPR045234 -
Phac5g01470 393 SUPERFAMILY CCCH zinc finger 116 146 IPR036855 GO:0046872
Phac5g01470 393 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Phac5g01470 393 Gene3D - 117 181 - -
Phac5g01470 393 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Phac5g01470 393 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Phac5g01470 393 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Phac5g01470 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01470 Phac-Chr5 34532134 34534144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01470 73 181 C2H2 Transcription Factor Family AT5G12850 67.890 2.61e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac5g01470 zf-CCCH 4.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01470 K23047 - gmx:100787049 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01470 5 34532134 34534144 Phac5g01470 5 34532134 34534144 ECH