Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01424 ATGGTGATAGGAGCAACAATGCAGAATAGATTTCTTCTTCATTTCCGGCCTTTTCTGAGCCGATGTCCTTCAGCTTGTTCAGTGTCTTCATTGCAAAATCTTGAGCAGGCTGTAAGAGAGGAAGTAGAAGCGAAAAACTATGTTAAAATTCCTGACCTTTTCATTTCCTTGGAGTCCTGCCAAAATTCAAATCCTTTTTCTTTCTTTTCCTCATTTCCTCATAACTTACAAGTGCATATTGTTGATGAAATTTTACAATCTTTTATACCTATCAGACCACGTTCTAAGCCCCAACTAGCTTATTCCTATCTTCTTTCTTACACCCTTCAAAGTTCCCATCCTTTCCCCCTTGCACTTGCTGTTCTACAACGGACTCTACGGTCTGGTTGCCTTCCAGTTCTTCAGACTCGTGATCTCCTCTCATCCACTTGGTTGGAGCGGCGATGCCTGTCTCAATCTGTTTCTGATATTTTACTTCAGATGCAAACAATTGGATATACTCCTGACTGTAGGACTTGTAATTATCTACTATCATGTCTCTGTTCTGTTGACCAACTAATGGAGGCCGTTAAAGTCCTTAGGGGCATGGGTGGGGCTGGATGTATTCCAGATTCAAATAGTTTTGACACTGTAATTGGTGCAATGAGCAGAGTGAGAAAGACTGCAGAGGCACAGGATTTGATGAAGCAAATGGTGGTGCAATATGGTTTAACCCCAGGGCAGGGAACACTGGTGAAATTATTGGCAGCATTACGGGCAAACAGGGAGATATGGAATGCTGTTGAGATGATTGAATTCCTGGAGAAAGAGGGTAACTCTGTTGGATTTGAGAGTTATGAGTTAGTGATTGAAGGGTGCTTGGAGAAATGTGAGTATGTTTTGGCTGCAAAGGTTGCAACAGGGATGGCAGAAAGAGGTGTCCAAACCTTGGCATCACTAGCTGAGGTAAGGCTTGCAATCCACGAAGCTGACTTTGGTTGGGGAAGATCCATTTTCATGGCACCTGGTGGGATTGTATACGAGGGAATATCTTTCATGGTTCCTAGCTCAAAAAGTGATTCGTAA 1065 0.4282 MVIGATMQNRFLLHFRPFLSRCPSACSVSSLQNLEQAVREEVEAKNYVKIPDLFISLESCQNSNPFSFFSSFPHNLQVHIVDEILQSFIPIRPRSKPQLAYSYLLSYTLQSSHPFPLALAVLQRTLRSGCLPVLQTRDLLSSTWLERRCLSQSVSDILLQMQTIGYTPDCRTCNYLLSCLCSVDQLMEAVKVLRGMGGAGCIPDSNSFDTVIGAMSRVRKTAEAQDLMKQMVVQYGLTPGQGTLVKLLAALRANREIWNAVEMIEFLEKEGNSVGFESYELVIEGCLEKCEYVLAAKVATGMAERGVQTLASLAEVRLAIHEADFGWGRSIFMAPGGIVYEGISFMVPSSKSDS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01424 354 NCBIfam pentatricopeptide repeat 172 205 IPR002885 -
Phac5g01424 354 Gene3D Tetratricopeptide repeat domain 109 316 IPR011990 GO:0005515
Phac5g01424 354 Pfam PPR repeat 172 201 IPR002885 -
Phac5g01424 354 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 154 308 - -
Phac5g01424 354 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01424 Phac-Chr5 33993622 33994837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01424 305 353 Monolignol Biosynthesis Gene Families AT5G48930 55.556 3.22e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01424 - - pvu:PHAVU_005G098700g 538.88