Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01419 ATGGGTTACTTCGACGACGATCACGAGCACAGTCCGTTTGGATCACTCCAGAACCACAACGACTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTATCGGTGGTGTTAGTTTTAGTCTTTGCACTTCACATCTACGCAAGGTTTTTTCTCAGGCGTCAAACTCGGCGCCGGAGCGCCATGTACCAACTCAGCCTCCACGTGGCACACGCGCAAACCCAACAACCAAACACCGGACTCGACCCTGCCCTCATCACAGCTCTCCCCACCTTCCCCTTCAAACACCAAAACGACGCCGTTGAGTGCGCCGTGTGCTTGAGCGTTCTGGAAGACGGAGAACACGTCAGGCTTCTGCCTAATTGCAAGCATAGCTTCCACGTCGGCTGCATCGACACGTGGCTCGCCTCGCATTCCACGTGTCCCCTCTGTCGAACCAAGGCCGAACCGCTTCCGCTAGAACCGGTCCAGCGCGAGGGCCCCACCGGGTTCGCTCTTCCCACCGCCCCGCTTTTCCTCGAAAACGTGGAAGGCACTTCCGACGGCGCTAATGGGTCACCTAAAGTCAACGGCTCCAATTCCAGATTGAGTTCGTTTCGAAGAATTCTTAGTAGAGAGAGATCATTGAAGAGAATCCAACCTTCTACGCATGATGATGTTGAACAAGACTTAGAGAGACAGTGA 684 0.5424 MGYFDDDHEHSPFGSLQNHNDFNRRILITAIVSLSVVLVLVFALHIYARFFLRRQTRRRSAMYQLSLHVAHAQTQQPNTGLDPALITALPTFPFKHQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDTWLASHSTCPLCRTKAEPLPLEPVQREGPTGFALPTAPLFLENVEGTSDGANGSPKVNGSNSRLSSFRRILSRERSLKRIQPSTHDDVEQDLERQ* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01419 227 CDD RING-H2_EL5-like 102 145 - -
Phac5g01419 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 152 - -
Phac5g01419 227 SUPERFAMILY RING/U-box 96 149 - -
Phac5g01419 227 MobiDBLite consensus disorder prediction 177 227 - -
Phac5g01419 227 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Phac5g01419 227 MobiDBLite consensus disorder prediction 179 199 - -
Phac5g01419 227 FunFam E3 ubiquitin-protein ligase ATL6 69 150 - -
Phac5g01419 227 MobiDBLite consensus disorder prediction 200 227 - -
Phac5g01419 227 SMART ring_2 103 144 IPR001841 -
Phac5g01419 227 Pfam Ring finger domain 102 145 IPR001841 -
Phac5g01419 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01419 Phac-Chr5 33806897 33807798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01419 1 226 C3H Transcription Factor Family AT2G42360 46.091 5.58e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01419 K19038 - gmx:100780265 311.612