Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01328 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGACTACCCGTTGATTGACGATGACATTACCGTCGGAGACGGTTCCTTCACCGTCTCCGCTTTCAACTGGCCCCCACCTCCTTCCAATGTCAGTGTTGAAATTGATGCTTCACTCGTTGATTCTGATGGCCTCAAAGATCCTGCCTTGAAAAAGAGGGGTAGATCTGATTTATGTACTGCTTCTAGCTCTAAGGCGTGTCGGGAGAAGTTGCGAAGGGATAGGCTTAATAACAAATTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGATGCTGTCCGTATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGAGTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGACTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTTAAGGTAGAGAAAGAGAAGTTGGAGCTTCAGGTAAAATCAATGAATGCCCAACCTGCTTTCTTGCCACCCCCTCCTGCAATCCCGGCCGCGTTTGCTCCACAAGGTCAAGCCCCGGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAATTTATGCCTCCGGCCGCAGTGGATACATCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 696 0.4871 MVSPENSNWLFDYPLIDDDITVGDGSFTVSAFNWPPPPSNVSVEIDASLVDSDGLKDPALKKRGRSDLCTASSSKACREKLRRDRLNNKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKESNTSLQEKIKELKTEKNELRDEKQRLKVEKEKLELQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01328 231 CDD bHLH_AtILR3_like 75 150 - -
Phac5g01328 231 Coils Coil 111 173 - -
Phac5g01328 231 FunFam Transcription factor bHLH34 61 119 - -
Phac5g01328 231 Pfam Helix-loop-helix DNA-binding domain 74 121 IPR011598 GO:0046983
Phac5g01328 231 Gene3D - 73 150 IPR036638 GO:0046983
Phac5g01328 231 SMART finulus 76 127 IPR011598 GO:0046983
Phac5g01328 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983
Phac5g01328 231 PANTHER BHLH TRANSCRIPTION FACTOR 4 231 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phac5g01328 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 147 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01328 Phac-Chr5 31870714 31873878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01328 1 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.417 2.54e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac5g01328 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01328 - - ccaj:109815088 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g01328 5 31870714 31873878 Phac5g01328 5 31870714 31873878 ECH