Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01234 ATGTACTTGTTTCCCTTATTCCAGTCTTTGATGAAAGTGTTCAGATATCAAACAATGAGTAGAGGTGGAAACAACATGATATTGGAAGTCGTGGAATATTTAAAAGAAGTGCAGATGAGATTTGGAGACAAAAAGTTCGTGGAGTTTTTGAAGATCATAAACGATTATAAAGTTCGCAGGATGACTGTTGGGAGTGTGGTAGAAAAAGTGAAGGAATTTCTTAAAGACCACCATGATCTCCTTTCTGGATTTAACAAGTTTTTGCCAAAGGGATATGAAATCCTTCTTCCACCTAAGGGTCCAGTCCAGTTGGAAGATGCTATCAAATATGTGCAGAAGGTTAAGGATCGATTTGAAGACACAGATGGTACCTACAAGGCATTTGTAAAGATATTAATTGATAGGCACGAAAATGGCATGTCAGTTGGTGAAGTATACCATGAGGTTGAAAAACTTTTTGAGGGTCACCATGATCTTGTTGGTGATTTCACTCTGTTTTTACCATCTCATGATGCTTAA 519 0.3738 MYLFPLFQSLMKVFRYQTMSRGGNNMILEVVEYLKEVQMRFGDKKFVEFLKIINDYKVRRMTVGSVVEKVKEFLKDHHDLLSGFNKFLPKGYEILLPPKGPVQLEDAIKYVQKVKDRFEDTDGTYKAFVKILIDRHENGMSVGEVYHEVEKLFEGHHDLVGDFTLFLPSHDA* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01234 172 Gene3D Paired amphipathic helix 106 168 IPR036600 GO:0006355
Phac5g01234 172 ProSiteProfiles PAH domain profile. 100 170 IPR003822 GO:0006355
Phac5g01234 172 SUPERFAMILY PAH2 domain 97 168 IPR036600 GO:0006355
Phac5g01234 172 Pfam Paired amphipathic helix repeat 124 167 IPR003822 GO:0006355
Phac5g01234 172 Pfam Paired amphipathic helix repeat 47 88 IPR003822 GO:0006355
Phac5g01234 172 SUPERFAMILY PAH2 domain 26 90 IPR036600 GO:0006355
Phac5g01234 172 ProSiteProfiles PAH domain profile. 15 91 IPR003822 GO:0006355
Phac5g01234 172 Gene3D Paired amphipathic helix 30 89 IPR036600 GO:0006355
Phac5g01234 172 PANTHER SIN3B-RELATED 30 172 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01234 Phac-Chr5 22570052 22573003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01234 100 167 WRKY Transcription Factor Family AT4G12020 36.765 3.07e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac5g01234 PAH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01234 K11644 - var:108321439 213.386