Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01192 ATGAGCAAAGCCCTGGGAGAAGAGGAAGACGAAGAAGAACAAGAACAAGACCAAGACCAAGACTGTTTCTACGACTCACACGACCGTTTACTCTCTCTCTCATCCTCCTGCTCATGCTCCAACTCCAACTCCGACAACGACGAAACCGAGAACGACGCCCAACCCCATCCAAACGACACACTTCCCAATTTCCCCCTAACCAACAACTACGACATATGGATCTCCCAACCCTCCTCTGTCTCCGAGCGCCGCACGCGCCTCCTCCTATCACTCGGCCTCTCCTCCCTCACGCGCCAAAACCCTCACCCTGCACCACGCGATCGCGTCTCCCCAATCCGATCCAAATCCGACAACACTACTGCCGCCGCCGCCGCCACCTCCTCCTCCGCCGCCGCCAATCATAGACCCCCAAACCCCAAGCCTCCGACCGAAGAGCTCTGCACTATACGCGATCTCGACAACGGGAAGGAGTTCGTGGTGAACGATTGGGAGAATCTGCGGGAGGTTGCCACCGGGCGGCACTTGACCATGGAGGAGTTCGAGATGACGGTGGGGCACTCCCCCATCGTTCAGGAGCTAATGCGGAGGCAGAATGTTGAAGAGGCTAGCGTCGATTCCAATGCGAGTGGCTCCAAGGTGAAGAAGAAAGGAGGGGGGTGGTTGAAGAGTATCAAGAGTGTGGCGAGCTCCGTCGCGGGCTACAGGGATCGACGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGCGGCCGGCGGTCCAGCTCCGCCACGGACGACAGCCAGGACGCGGCGTTTCACGGTCCGGAGAGGGTGAGAGTGAAGCAGTATGGGAAGAGTTGCAAGGAGGTGACGGCGCTTTACAAGAGCCAGGAGATTCAGGCGCATAGTGGGTCTATTTGGAGCATTAAGTTCAGTTTGGATGGGAAGTATTTGGCGAGTGCTGGTGAGGATTGTGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAGGAAGGGGGAGCTGCTGCTGCTGGATAGGGAGAAGGGGGAGGATGGGGGGAATGTGAATATGTTTTTGGTTGTGAATGGGTCGCCGGAGCCGACGGCTGCGGCAATGCTATCTCCGCTCAGAGATGTGGAGAGGAAGAGGAAGGGGAGGTCCAGTGTGAGTAGGAAGTCCTTGAGCCTCGACCAGTTTGTCGTTCCGCAGACCGTGTTTGCACTCACTGACAAACCCGTCTGCTCCTTTAAGGGACATCTGCATGACGTGCTTGACCTCTCATGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTTTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGACAGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAACCTGCAAAACAAGAAAAAGAAATCACATCATAAGAAAATTACTGGTTTCCAGTTTGCCCCTGGAAGTTCATCAGAAGTACTTATCACATCTGCTGACTCAAGAATACGGGTGGTTGATGGTGTTGATCTGATTCATAAGTTTAAAGGCTTTCGGAATGCAACTAGCCCAATTTCAGCATCCCTCACAACAAATGGTAAATATGTTGTTGCAGCAAGTGAGGACTCCCATGTATACATCTGGAAAAATGAGGCTGATTGCAGGCCTAACAGAAGCAAAGGTGTCACTGTCACACGATCATATGAACATTTTCACTGTAAAGACGTGTCAGTGGCAATTCCCTGGCCTGGTATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCCGAGCTTGATAACAACGGCGATGAAGTCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGTCACCGAGGGTTCAAGACCTGCATCTTGTTACAACAATAGTCCACGCCATGCAACCATTGCAAGTGCCACAAATAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAGCTTCTTCTGGCTGCAAGAAACCAAAGCCCTCGTGTCAGTATGGATTTCTCTAATGGGGCAAGTCAAAAAATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2355 0.5062 MSKALGEEEDEEEQEQDQDQDCFYDSHDRLLSLSSSCSCSNSNSDNDETENDAQPHPNDTLPNFPLTNNYDIWISQPSSVSERRTRLLLSLGLSSLTRQNPHPAPRDRVSPIRSKSDNTTAAAAATSSSAAANHRPPNPKPPTEELCTIRDLDNGKEFVVNDWENLREVATGRHLTMEEFEMTVGHSPIVQELMRRQNVEEASVDSNASGSKVKKKGGGWLKSIKSVASSVAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDAAFHGPERVRVKQYGKSCKEVTALYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVEGERKGELLLLDREKGEDGGNVNMFLVVNGSPEPTAAAMLSPLRDVERKRKGRSSVSRKSLSLDQFVVPQTVFALTDKPVCSFKGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLIHKFKGFRNATSPISASLTTNGKYVVAASEDSHVYIWKNEADCRPNRSKGVTVTRSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELDNNGDEVSSANHPPTPVEENFVTEGSRPASCYNNSPRHATIASATNSYFFDRISATWPEEKLLLAARNQSPRVSMDFSNGASQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 334 IPR001680 GO:0005515
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 450 IPR001680 GO:0005515
Phac5g01192 784 MobiDBLite consensus disorder prediction 96 146 - -
Phac5g01192 784 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Phac5g01192 784 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Phac5g01192 784 PRINTS G protein beta WD-40 repeat signature 470 484 IPR020472 -
Phac5g01192 784 MobiDBLite consensus disorder prediction 667 687 - -
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 444 - -
Phac5g01192 784 MobiDBLite consensus disorder prediction 29 48 - -
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 484 - -
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 484 IPR001680 GO:0005515
Phac5g01192 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 326 - -
Phac5g01192 784 SMART WD40_4 403 441 IPR001680 GO:0005515
Phac5g01192 784 SMART WD40_4 486 524 IPR001680 GO:0005515
Phac5g01192 784 SMART WD40_4 286 325 IPR001680 GO:0005515
Phac5g01192 784 SMART WD40_4 444 483 IPR001680 GO:0005515
Phac5g01192 784 SMART WD40_4 577 618 IPR001680 GO:0005515
Phac5g01192 784 SMART WD40_4 531 576 IPR001680 GO:0005515
Phac5g01192 784 MobiDBLite consensus disorder prediction 232 270 - -
Phac5g01192 784 Gene3D - 373 641 IPR015943 GO:0005515
Phac5g01192 784 FunFam WD repeat-containing protein 44 391 657 - -
Phac5g01192 784 MobiDBLite consensus disorder prediction 114 134 - -
Phac5g01192 784 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Phac5g01192 784 Pfam WD domain, G-beta repeat 446 483 IPR001680 GO:0005515
Phac5g01192 784 Pfam WD domain, G-beta repeat 292 324 IPR001680 GO:0005515
Phac5g01192 784 Pfam WD domain, G-beta repeat 581 618 IPR001680 GO:0005515
Phac5g01192 784 MobiDBLite consensus disorder prediction 1 65 - -
Phac5g01192 784 SUPERFAMILY WD40 repeat-like 288 620 IPR036322 GO:0005515
Phac5g01192 784 MobiDBLite consensus disorder prediction 665 697 - -
Phac5g01192 784 PANTHER WD REPEAT DOMAIN 44 13 781 IPR040324 -
Phac5g01192 784 FunFam Transducin/WD40 repeat-like superfamily protein 251 358 - -
Phac5g01192 784 Gene3D - 236 360 IPR015943 GO:0005515
Phac5g01192 784 MobiDBLite consensus disorder prediction 235 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01192 Phac-Chr5 17816940 17823227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01192 398 615 U-box Gene Family AT1G04510 27.311 1.29e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01192 K20241 - gmx:100815065 1267.29