Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01099 ATGAAGATTCAGTGTAACGTCTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCCGCTAACAAGCTTGCCAGCAAGCACCAAAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTGGAGGATCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCCATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGCGCATCATCAACATCTTTGAAGTCAGAATCTGGGGAGAAAATTTCAGATACAAAATCCTCTTCTATCTCTAGAAAGGTTTCCACACTGCCTCAGCCATCAGATTACAATGAATTGTTACCTATAGAAGTTGGAGGAGTTGAGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAGTGGACAATAGACGAATTTATTGGCTTAAACGAGTTCAGTCAGAATTATGAATACATGGAAGGATCATCAAGGGTGATAATAGGACAGGGATGGGGCCAATCATTTCTTCCCAAGGCTGATGGTGGTAAGATAGGGGATTTTGATTCTCCTTTTTTAAGATCCGGTGACGAGGAAATGGAGGAGGAGGAGGACTATTTGGAACGGGTTCCAGATTCATCATGGACAGTTCCACAGATCCCTTCCCCACCCACAGCTTCTGGGTTACACTGGCCAAAACATACTCAAAATTCATCTGATAGTCTTCTGTTTGTTCCTGACATAAGCTTTTCTCAAATGCAACACTCTGAGATCAGTAGTATATTTTCTAGACGCCGGAGGCAGCTTTAA 924 0.447 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSESGEKISDTKSSSISRKVSTLPQPSDYNELLPIEVGGVEGFPPAKESFGGGSTAGNISQWTIDEFIGLNEFSQNYEYMEGSSRVIIGQGWGQSFLPKADGGKIGDFDSPFLRSGDEEMEEEEDYLERVPDSSWTVPQIPSPPTASGLHWPKHTQNSSDSLLFVPDISFSQMQHSEISSIFSRRRRQL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01099 307 Gene3D Classic Zinc Finger 1 92 - -
Phac5g01099 307 CDD Bbox1_BBX-like 5 47 - -
Phac5g01099 307 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac5g01099 307 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phac5g01099 307 MobiDBLite consensus disorder prediction 236 272 - -
Phac5g01099 307 FunFam B-box zinc finger protein 22 1 93 - -
Phac5g01099 307 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac5g01099 307 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Phac5g01099 307 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phac5g01099 307 MobiDBLite consensus disorder prediction 110 141 - -
Phac5g01099 307 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 288 - -
Phac5g01099 307 CDD Bbox1_BBX-like 56 99 - -
Phac5g01099 307 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01099 Phac-Chr5 14118729 14122868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01099 1 305 C2C2-CO-like Transcription Factor Family AT1G78600 48.780 7.25e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phac5g01099 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01099 - - gmx:100790959 501.516