Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01059 ATGGCCGAGCTCACAGAACTGTTCCCATTGGGCCAACAATTCGATGGTTTGATACGCATGTGTGTGCATGCCATCTCTTATGATCTTCCAACTCTCATCACTGTTCTATTCGTACTCACATTGTTGTTCTTCATCCTACACCGAATTCTCAACGGGATGTTCTTCTGGGTAATGGAAATGGAGTCAAATGAACATGATCTTGAAGAAGGAAGCACTCATTTGGTAAACTACGGAGAGCCCTCTCAGCATGTTACCATCTTTCATGCTCTTGTGCACACTAATTTGCATGCTTGGACATTGGTGACTGCATTTGAAAGAGTTCATTCCAAAATAGGGCAAAATCTTAGAGCTTCCAAGAAATTACCCCCCTTGGTCAACTATGGAATGCATGGTAAAGCTAGAAATTGTGGGGAATGTGCCATTTGCTTGGAAGAATTCAGAGAGAATCAATTATGTCAAGTTTTTCCCGTGTGCAAACACCTTTTTCATTCGGATTGCATAGACCACTGGTTGCAGAAGAAATTAAACTGCCCTATATGTCGTGGTTCTGTATAG 555 0.4198 MAELTELFPLGQQFDGLIRMCVHAISYDLPTLITVLFVLTLLFFILHRILNGMFFWVMEMESNEHDLEEGSTHLVNYGEPSQHVTIFHALVHTNLHAWTLVTAFERVHSKIGQNLRASKKLPPLVNYGMHGKARNCGECAICLEEFRENQLCQVFPVCKHLFHSDCIDHWLQKKLNCPICRGSV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01059 184 CDD RING-H2_PA-TM-RING 138 181 - -
Phac5g01059 184 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 30 182 IPR044675 -
Phac5g01059 184 SMART ring_2 139 180 IPR001841 -
Phac5g01059 184 Pfam Ring finger domain 138 181 IPR001841 -
Phac5g01059 184 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Phac5g01059 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 184 IPR013083 -
Phac5g01059 184 SUPERFAMILY RING/U-box 138 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01059 Phac-Chr5 12879206 12879760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01059 24 181 C3H Transcription Factor Family AT1G53010 32.317 1.51e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01059 - - gmx:102660073 285.804