Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01040 ATGTGCTGTGCTTGGCCTACATGCAACTCTAACTGGATAAAGATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCCAGGGCTTTGAATAGTTCTGGAGTTTCGGATAGGAACCAAAGGGTTCACTATCCTGAAAGGAACCCATTCTCGGGTGAGGGATCGCAGGATTCGGGGTTTAAAAGAGAAAGAGAAAGGGTTCTGTTGGCTCAAGGTGATCATGCTAAAACTTTGGGTGGTGGGTTTTCTGGGTTATGTGAAGATGAAGTGGAGGTTGACCCCTTTTATGGTGCTGTGGAATGGGGTGATGTTAGCTTGAGGCAGTGGTTGGATAAACCCCAACGATCTGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGTTTTGTCATGTCGTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCGGATTCTCTAGGAGAAGGATTAAACAACCAAGGTGGTGAGATCAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCATCAGAGCTTGGGAAGTGAAGATTTTGTGCCTGTCAAGACTTCTACAACTACTGCTCGGTCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAATTGGTACACTAGTCCTGAAGAGGTTGCTGATGACTCTAGTTCTTGTGCTTCAGATGTTTATCGATTGGGGGTTCTTCTTTTTGAGCTATTTTGTCCGCTAAGCTCAAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTTAAGTGGCCCAAAGAAGCTTCCTTTTGCTTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAAAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTGAGACAAAGGATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTATTACTTCAACAGAGAAAACAGGAAGTTGCTGAGAAGTTGCAACACACTATCTCTTTTCTGTGCTCGGATATTGAAGAAGTGACTAAGCAGCAAATTAGATTTAAGCAGATTACTGGTACTGAACTGGGGAGTGATGATCGTTCAGCATCAAGTTTCCCATCAATGACAATTGTTGACAGTGAGGATTCTGCATATCTAGGGACTAGAAAACGAGTGAGACTAGGGACACATGTTAAAAACATTGAGGAATGTGATGATTATGATGATGATGATGATGGAGGAGATGATCAGAAAAGTAACGGAGGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTTTTGACACGATGTAGACCGGCCTATTCCTCTGGGAAACTGGTGAGTACGCATCCTCCTGTAACAAGTGATGGTAGAGGGTCTGTTGTTTTGACTGAAAGAAGTTGCATCAATGACAAGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCTTGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTGGTATGTTCACTCAGTTTTGATCGTGATGGAGAATTTTTTGCTACTGCTGGTGTGAATAAGAAAATTAAAGTGTTTGAATGTGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTAAGCAGTTTATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTGCAGTTATGGGATGTGACAAGAAGTCAAGTAGTCTCTGACATGAGGGAGCATGAGCGGCGTGTGTGGTCCATTGATTTCTCGTCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGCACCATCAAAACCAAGGCAAATGTATGCTGTGTTCAGTTCCCGCTGGATTCTTCTCGTTTCCTTGCATTTGGTTCAGCAGATCATCGAATATATTACTATGATCTTCGCAACCTTAAAATGCCGCTGTGTACTTTGGTTGGACACAACAAGACTGTCAGCTACATCAAGTTTGTAGACACTGTCAACCTTGTCTCAGCTTCCACAGATAACACTTTAAAGCTTTGGGATTTGTCTACGTGTGCATCTCGAGTTATAGACTCACCGATTCAATCATTCACAGGTCACGTGAATGTCAAGAACTTTGTGGGGTTATCAGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCTGCTCTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCCGGTCACGAAGTGGATGACGCAGCGCAATTCGTTTCGTCAGTTTGTTGGCGGGGTCAGTCATCCACCTTGCTAGCCGCAAATTCCACAGGGAATGTCAAAATTCTGGAGATGGTTTAG 2733 0.4266 MCCAWPTCNSNWIKMEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNPFSGEGSQDSGFKRERERVLLAQGDHAKTLGGGFSGLCEDEVEVDPFYGAVEWGDVSLRQWLDKPQRSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNNQGGEIKTPTSLCPHDMHHQSLGSEDFVPVKTSTTTARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMNWYTSPEEVADDSSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEVAEKLQHTISFLCSDIEEVTKQQIRFKQITGTELGSDDRSASSFPSMTIVDSEDSAYLGTRKRVRLGTHVKNIEECDDYDDDDDGGDDQKSNGGFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVSTHPPVTSDGRGSVVLTERSCINDKKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASRSKLSSLCWNAYIKSQIASSNFEGVVQLWDVTRSQVVSDMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01040 910 SMART serkin_6 12 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac5g01040 910 Pfam WD domain, G-beta repeat 688 721 IPR001680 GO:0005515
Phac5g01040 910 Pfam WD domain, G-beta repeat 598 627 IPR001680 GO:0005515
Phac5g01040 910 Pfam WD domain, G-beta repeat 770 805 IPR001680 GO:0005515
Phac5g01040 910 MobiDBLite consensus disorder prediction 24 62 - -
Phac5g01040 910 Gene3D Transferase(Phosphotransferase) domain 1 105 375 - -
Phac5g01040 910 ProSiteProfiles Protein kinase domain profile. 8 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac5g01040 910 ProSitePatterns Trp-Asp (WD) repeats signature. 792 806 IPR019775 -
Phac5g01040 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 808 IPR001680 GO:0005515
Phac5g01040 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 688 725 - -
Phac5g01040 910 Gene3D - 574 910 IPR015943 GO:0005515
Phac5g01040 910 SMART WD40_4 767 805 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 864 908 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 724 763 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 593 628 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 639 678 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 681 721 IPR001680 GO:0005515
Phac5g01040 910 SMART WD40_4 814 853 IPR001680 GO:0005515
Phac5g01040 910 SUPERFAMILY Protein kinase-like (PK-like) 96 365 IPR011009 -
Phac5g01040 910 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 774 808 - -
Phac5g01040 910 PANTHER PROTEIN SPA1-RELATED 2 55 910 IPR044630 GO:0009640
Phac5g01040 910 MobiDBLite consensus disorder prediction 24 41 - -
Phac5g01040 910 SUPERFAMILY WD40 repeat-like 598 907 IPR036322 GO:0005515
Phac5g01040 910 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 571 910 - -
Phac5g01040 910 Coils Coil 360 380 - -
Phac5g01040 910 ProSiteProfiles Trp-Asp (WD) repeats profile. 688 730 IPR001680 GO:0005515
Phac5g01040 910 PRINTS G protein beta WD-40 repeat signature 665 679 IPR020472 -
Phac5g01040 910 PRINTS G protein beta WD-40 repeat signature 792 806 IPR020472 -
Phac5g01040 910 PRINTS G protein beta WD-40 repeat signature 708 722 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01040 Phac-Chr5 12656852 12662428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01040 665 808 Miscellaneous Gene Families AT5G08390 28.082 3.12e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Phac5g01040 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01040 K26557 - gmx:100811457 1680.23