LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g01039	ATGGGTGGCATGTGTTGCAAGCCCTCCGCCATTGAAGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAGCAAGGCTGTGTCGGACTTGCGTGTATCTAGGGGAACTTCATCGAGGAGGGAGGAAGTGTTTCGTGTAAAAGATAGATATGATAACAATGAGGGAAGAACTGCATTGATTGATAAGCAAGGGAATGGTTCTGTTAGAGTGCAAGGTGATAGTATTGAAAGGAAGAGGGAGAAAATGGAATATGCTGTTGCTCAACATCCGGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAGCAGGTTGCAGCTGGATGGCCCTCATGGCTGGCAGCAGTGGCTGGAGAGGCTATCAGGGGATGGCTGCCGCGGCGTGCAGATTCTTTTGAGAAGTTGGATAAAATTGGACAGGGAACTTATAGCAATGTTTATAGAGCTCGTGATCTTGAACAGAAAAAAATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCTGGGCTTGCATCACATCCTGGACTGAAGTTTACTGAAGCTCAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTACTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGGATATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCTAGTCAAGCTCAGCCATTGACGAGCCGAGTTGTCACTCTTTGGTATAGGCCTCCTGAGCTTTTGCTTGGAGCCACTTATTATGGCACTGCTGTAGACTTGTGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGGAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGACTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTATAGACGATGCGTTTCTGAAACATTCAAGGACTTTCCTACACCTGCAATAGAATTGATAGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAACTTCAGCATCTGCATTGAGTAGTGAGTTCTTCTCAACAAAGCCTCTACCTTGTGATCCCTCAAGCTTACCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGGAGCAGGAGTCAAGGGCCAGAGGCATGATCTTGAGAGAAAAGGCACAAGAGAATCACGAGCCATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGGCAAGGGCAGGCTAATTCTCAGAGCAGGAGTGAGAAGTTTAACCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGATCCCCCTAGACCATCACAAGCTGCAGCAGTAAGTGTGGATCCCCCTGTTCATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCAGCATGGGCAAAAGCTGGCAAGAACCAGGACGATGCTCCCAAGATTTCAATGGGAGGAGACTTATCAACAATATCAGGCTTAGTTGCGGCAAGGAGGAGTATGTTGTCCGATGATCGCAGAGAAAGGTCTGGATCATCACAAGCAGAGGCCCAAAAACTAATAAGCAGGTTCCCAGGATCCTTCAAGGAGGCCTCTGAGTCAATGATGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGAAGAGCCAGCAGCAACAAAGACTCAAGTCTTGTTGGTTATGGCTCCAAGGGTCATAAAATTCATTATTCTGGCCCTCTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAGGACCATGACCGCCAAATCCAAGAGGCGGTTCGAAGATCAAGATTAGACAAGGCAAAGATGAGAAGACTCCAAGCTGAGGGAAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA	2127	0.456	MGGMCCKPSAIEDSKESPRERLSSKAVSDLRVSRGTSSRREEVFRVKDRYDNNEGRTALIDKQGNGSVRVQGDSIERKREKMEYAVAQHPGIGSVPKAMEGEQVAAGWPSWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPSQAQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPTPAIELIETLLSIDPADRGTSASALSSEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGGAGVKGQRHDLERKGTRESRAIPAPDANAELVLSMQKRQGQANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAAVSVDPPVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGDLSTISGLVAARRSMLSDDRRERSGSSQAEAQKLISRFPGSFKEASESMMQQDQKHHAHAPQKEEGRASSNKDSSLVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQITNSLFVSGR*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac5g01039	708	CDD	STKc_CDK9_like	131	415	-	-
	Phac5g01039	708	Pfam	Protein kinase domain	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g01039	708	PANTHER	CELL DIVISION PROTEIN KINASE	129	421	-	-
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	483	498	-	-
	Phac5g01039	708	ProSiteProfiles	Protein kinase domain profile.	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g01039	708	FunFam	probable serine/threonine-protein kinase At1g54610	214	455	-	-
	Phac5g01039	708	Gene3D	Transferase(Phosphotransferase) domain 1	214	454	-	-
	Phac5g01039	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	614	635	-	-
	Phac5g01039	708	SUPERFAMILY	Protein kinase-like (PK-like)	125	423	IPR011009	-
	Phac5g01039	708	FunFam	probable serine/threonine-protein kinase At1g54610	118	213	-	-
	Phac5g01039	708	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	608	646	-	-
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	421	564	-	-
	Phac5g01039	708	Gene3D	Phosphorylase Kinase; domain 1	118	213	-	-
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	1	39	-	-
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	434	469	-	-
	Phac5g01039	708	SMART	serkin_6	131	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac5g01039	708	MobiDBLite	consensus disorder prediction	12	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g01039	Phac-Chr5	12587988	12595319	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g01039	123	472	Core Cell Cycle Gene Families	AT5G10270	51.913	7.75e-120	366

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac5g01039		Pkinase	6.4e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g01039	-		-	gmx:100792173	1360.9