Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g01005 ATGGACATCAAGAGCAGAGATAGGAGGCAAGTGTCAATTGAAAAGGTGAGGAGAGACAGCCCGGTTGAAGTAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGAGGTGAGGGCTTTCTTGCAGAAGATGAGAGGAAGAAGGGTGGTGCTGGTGGTGGGAGAAGAGGGTCTACTGGAGGTGGAGTTTCTCCACCTGCTTGTCAGGCTGAGATGTGTTGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCACCTTTTGTTATGGTCGCAGGAATGAGGCAGAGATTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGACGAAGCTAAAAGAAGCTGCCGGAGACGGTTGGCAAGACACAATGAGCGGCGCCGGAAGAGCAATGCTGAAACTTGCAATGAAGGATGCAGCGGCAGCAAAGGGCAGCACCCTGCAGAAAGCCTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCACTTCAGATGA 573 0.5096 MDIKSRDRRQVSIEKVRRDSPVEVEDEEEEEDESVAGGEGFLAEDERKKGGAGGGRRGSTGGGVSPPACQAEMCCADLTVAKRYHRRHKVCELHSKAPFVMVAGMRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKSNAETCNEGCSGSKGQHPAESLCRNADDWGRIQMNMARNSGYRSFHFR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g01005 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Phac5g01005 190 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Phac5g01005 190 Coils Coil 119 139 - -
Phac5g01005 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Phac5g01005 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Phac5g01005 190 MobiDBLite consensus disorder prediction 23 39 - -
Phac5g01005 190 MobiDBLite consensus disorder prediction 1 65 - -
Phac5g01005 190 MobiDBLite consensus disorder prediction 1 22 - -
Phac5g01005 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Phac5g01005 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 146 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g01005 Phac-Chr5 11793281 11794240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g01005 55 157 SBP-box Gene Family AT1G53160 63.107 1.08e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac5g01005 SBP 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g01005 - - gmx:100815775 286.96