Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00995 ATGGCGATGACGATGGCCATGGCGATGACCAGGAAGGTGGGAAAAATAAAATACGCGAGGCAGCAGAACCCCGCCATTCCCAGAGTTATGCGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGGTAGCACCGCCGCGGACGGCCGCGAAGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGTCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGAAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTGGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGTGATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGGTATCTTTCTAGATTGCATGTTTGGATTTTTTGTTACCAACTTTGTTTTCTGTATTATGATTTGTTATTCATTTTTCTTCTAGATCCATAA 1038 0.4981 MAMTMAMAMTRKVGKIKYARQQNPAIPRVMRSQFLKLKNLINGSTAADGREDSDGTATDSKTFDDLGLSEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQVIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRYLSRLHVWIFCYQLCFLYYDLLFIFLLDP* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00995 345 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 58 322 - -
Phac5g00995 345 Gene3D - 51 265 IPR027417 -
Phac5g00995 345 SMART ultradead3 80 280 IPR014001 -
Phac5g00995 345 Pfam DEAD/DEAH box helicase 86 254 IPR011545 GO:0003676|GO:0005524
Phac5g00995 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 261 IPR027417 -
Phac5g00995 345 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 61 89 IPR014014 GO:0003724
Phac5g00995 345 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 265 IPR014001 -
Phac5g00995 345 CDD DEADc_DDX49 63 266 - -
Phac5g00995 345 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00995 Phac-Chr5 11470570 11479123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00995 61 321 Eukaryotic Initiation Factors Gene Family AT3G13920 30.651 1.60e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00995 K14778 - gmx:100798597 468.003