Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00993 ATGAAGCGTTCGCGCAGAGAAAATGGCGATGACGATGGCCATGGCGATGACCAGGAAGGTGGGAAAAATAAAATACGCGAGGCAGCAGAACCCCGCCATTCCCAGAGTTATGCGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGCACCGCCGCGGACGGCCGCGAAGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGTCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGAAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTGGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGTGATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCTAGAAGCAGCAGCTCTTTATTCATTCAAATCACAATCTCAGAGACTTGAAGCACTTCATCAATTCAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTGCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTTCAGAGAAAGGATTGTTGAAGAAAAATAAAAGGAGAAAACAAAGTAAAGAATTTTCAGAGGAAGGGAAAGAGGTAGAAGCACTGAATATAGGTTTTCGGTGCTAA 1551 0.4694 MKRSRRENGDDDGHGDDQEGGKNKIREAAEPRHSQSYALPVPQTQESHQRTAADGREDSDGTATDSKTFDDLGLSEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQVIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQSQRLEALHQFKSGKVSILLATDVASRGLDIATVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLSEKGLLKKNKRRKQSKEFSEEGKEVEALNIGFRC* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00993 516 Pfam Helicase conserved C-terminal domain 301 406 IPR001650 -
Phac5g00993 516 CDD SF2_C_DEAD 283 415 - -
Phac5g00993 516 Gene3D - 34 271 IPR027417 -
Phac5g00993 516 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 508 - -
Phac5g00993 516 SMART helicmild6 325 406 IPR001650 -
Phac5g00993 516 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Phac5g00993 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 426 IPR027417 -
Phac5g00993 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Phac5g00993 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 445 IPR001650 -
Phac5g00993 516 SMART ultradead3 86 286 IPR014001 -
Phac5g00993 516 MobiDBLite consensus disorder prediction 1 31 - -
Phac5g00993 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Phac5g00993 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 271 IPR014001 -
Phac5g00993 516 MobiDBLite consensus disorder prediction 50 65 - -
Phac5g00993 516 CDD DEADc_DDX49 69 272 - -
Phac5g00993 516 Gene3D - 277 456 IPR027417 -
Phac5g00993 516 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00993 Phac-Chr5 11470570 11479123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00993 67 419 Eukaryotic Initiation Factors Gene Family AT3G13920 32.295 5.11e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00993 K14778 - gmx:100804060 762.681