Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00992 ATGGCGATGACGATGGCCATGGCGATGACCAGGAAGGTGGGAAAAATAAAATACGCGAGGCAGCAGAACCCCGCCATTCCCAGAGTTATGCGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGTGAACCCTAGCACCGCCGCGGACGGCCGCGAAGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGTCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGAAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTGGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGTGATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCTAGAAGCAGCAGCTCTTTATTCATTCAAATCACAATCTCAGAGACTTGAAGCACTTCATCAATTCAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTGCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTTCAGAGAAAGGATTGTTGAAGAAAAATAAAAGGAGAAAACAAAGTAAAGAATTTTCAGAGGAAGGGAAAGAGGTTTTCGGTGCTAAGAATGTCGAGGAAATGAATACAAAAACTGAAAATAATAAAAGGTCTGTCAAAGAAAAAAAAGTTAAAAGAAAGAAGTAA 1599 0.4597 MAMTMAMAMTRKVGKIKYARQQNPAIPRVMRSQFLKLKNLINVNPSTAADGREDSDGTATDSKTFDDLGLSEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQVIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQSQRLEALHQFKSGKVSILLATDVASRGLDIATVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLSEKGLLKKNKRRKQSKEFSEEGKEVFGAKNVEEMNTKTENNKRSVKEKKVKRKK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00992 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Phac5g00992 532 CDD SF2_C_DEAD 279 411 - -
Phac5g00992 532 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Phac5g00992 532 Coils Coil 506 526 - -
Phac5g00992 532 SMART ultradead3 82 282 IPR014001 -
Phac5g00992 532 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Phac5g00992 532 Gene3D - 53 267 IPR027417 -
Phac5g00992 532 Gene3D - 273 451 IPR027417 -
Phac5g00992 532 MobiDBLite consensus disorder prediction 471 532 - -
Phac5g00992 532 Pfam Helicase conserved C-terminal domain 297 402 IPR001650 -
Phac5g00992 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 441 IPR001650 -
Phac5g00992 532 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 60 531 - -
Phac5g00992 532 SMART helicmild6 321 402 IPR001650 -
Phac5g00992 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 63 91 IPR014014 GO:0003724
Phac5g00992 532 CDD DEADc_DDX49 65 268 - -
Phac5g00992 532 MobiDBLite consensus disorder prediction 491 523 - -
Phac5g00992 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 422 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00992 Phac-Chr5 11470570 11479123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00992 63 415 Eukaryotic Initiation Factors Gene Family AT3G13920 32.295 8.55e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00992 K14778 - gmx:100804060 769.229