Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00990 ATGGCGATGACGATGGCCATGGCGATGACCAGGAAGGTGGGAAAAATAAAATACGCGAGGCAGCAGAACCCCGCCATTCCCAGAGTTATGCGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGGTAGCACCGCCGCGGACGGCCGCGAAGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGTCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGAAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTGGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGTGATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCTAGAAGCAGCAGCTCTTTATTCATTCAAATCACAATCTCAGAGACTTGAAGCACTTCATCAATTCAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTGCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTTCAGAGAAAGGATTGTTGAAGAAAAATAAAAGGAGAAAACAAAGTAAAGAATTTTCAGAGGAAGGGAAAGAGGTTTTCGGTGCTAAGAATGTCGAGGAAATGAATACAAAAACTGAAAATAATAAAAGGTCTGTCAAAGAAAAAAAAGTTAAAAGAAAGAAGTAA 1593 0.4595 MAMTMAMAMTRKVGKIKYARQQNPAIPRVMRSQFLKLKNLINGSTAADGREDSDGTATDSKTFDDLGLSEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQVIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQSQRLEALHQFKSGKVSILLATDVASRGLDIATVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLSEKGLLKKNKRRKQSKEFSEEGKEVFGAKNVEEMNTKTENNKRSVKEKKVKRKK* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00990 530 SMART ultradead3 80 280 IPR014001 -
Phac5g00990 530 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 58 529 - -
Phac5g00990 530 Gene3D - 271 453 IPR027417 -
Phac5g00990 530 Gene3D - 51 265 IPR027417 -
Phac5g00990 530 MobiDBLite consensus disorder prediction 469 530 - -
Phac5g00990 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 61 89 IPR014014 GO:0003724
Phac5g00990 530 Pfam Helicase conserved C-terminal domain 295 400 IPR001650 -
Phac5g00990 530 CDD DEADc_DDX49 63 266 - -
Phac5g00990 530 MobiDBLite consensus disorder prediction 489 521 - -
Phac5g00990 530 CDD SF2_C_DEAD 277 409 - -
Phac5g00990 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Phac5g00990 530 Coils Coil 504 524 - -
Phac5g00990 530 Pfam DEAD/DEAH box helicase 86 254 IPR011545 GO:0003676|GO:0005524
Phac5g00990 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 265 IPR014001 -
Phac5g00990 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 420 IPR027417 -
Phac5g00990 530 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Phac5g00990 530 SMART helicmild6 319 400 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00990 Phac-Chr5 11470570 11479123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00990 61 413 Eukaryotic Initiation Factors Gene Family AT3G13920 32.295 8.13e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00990 K14778 - gmx:100804060 767.303