Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac5g00990 | ATGGCGATGACGATGGCCATGGCGATGACCAGGAAGGTGGGAAAAATAAAATACGCGAGGCAGCAGAACCCCGCCATTCCCAGAGTTATGCGCTCCCAGTTCCTCAAACTCAAGAATCTCATCAACGGTAGCACCGCCGCGGACGGCCGCGAAGACAGCGACGGAACCGCGACAGACAGCAAGACGTTCGACGACCTCGGACTGTCGGAGTGGGCGGTGAAGACGTGCCGGGAGCTCGGAATGCGGATGCCACGGCGCGTGCAGCAGCGGTGCATACCGCCTGTGCTGGAGGGCCGGCACGTGCTGGGCATCGACGAGACAGGAAGCGGGAAAACGGCAGCCTTTGCTCTTCCGATCCTGCATCGACTCGCGGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACACCCACGCGCGAACTCGCGTTCCAGCTGGCGGAGCAGTTCCGCGCTCTGGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACTCCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTGCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTATTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCGAGAACATTACCAAGATAAGATGTATGTATACGAGGCATATGAAGGCTTTAAAACAGTTCAATCACTTAAGCAACAAGTGATCTTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGTCAAAAATGGAAGATATGGAAATTCGGTCTGCCATTGTGTTTATCTCAACTTGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCTAGAAGCAGCAGCTCTTTATTCATTCAAATCACAATCTCAGAGACTTGAAGCACTTCATCAATTCAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTGCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTTCAGAGAAAGGATTGTTGAAGAAAAATAAAAGGAGAAAACAAAGTAAAGAATTTTCAGAGGAAGGGAAAGAGGTTTTCGGTGCTAAGAATGTCGAGGAAATGAATACAAAAACTGAAAATAATAAAAGGTCTGTCAAAGAAAAAAAAGTTAAAAGAAAGAAGTAA | 1593 | 0.4595 | MAMTMAMAMTRKVGKIKYARQQNPAIPRVMRSQFLKLKNLINGSTAADGREDSDGTATDSKTFDDLGLSEWAVKTCRELGMRMPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISAVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLLFSATTTSNLQKLREHYQDKMYVYEAYEGFKTVQSLKQQVIFIPKKVKDVYLMHILSKMEDMEIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQSQRLEALHQFKSGKVSILLATDVASRGLDIATVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLSEKGLLKKNKRRKQSKEFSEEGKEVFGAKNVEEMNTKTENNKRSVKEKKVKRKK* | 531 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac5g00990 | 530 | SMART | ultradead3 | 80 | 280 | IPR014001 | - | |
Phac5g00990 | 530 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 58 | 529 | - | - | |
Phac5g00990 | 530 | Gene3D | - | 271 | 453 | IPR027417 | - | |
Phac5g00990 | 530 | Gene3D | - | 51 | 265 | IPR027417 | - | |
Phac5g00990 | 530 | MobiDBLite | consensus disorder prediction | 469 | 530 | - | - | |
Phac5g00990 | 530 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 61 | 89 | IPR014014 | GO:0003724 | |
Phac5g00990 | 530 | Pfam | Helicase conserved C-terminal domain | 295 | 400 | IPR001650 | - | |
Phac5g00990 | 530 | CDD | DEADc_DDX49 | 63 | 266 | - | - | |
Phac5g00990 | 530 | MobiDBLite | consensus disorder prediction | 489 | 521 | - | - | |
Phac5g00990 | 530 | CDD | SF2_C_DEAD | 277 | 409 | - | - | |
Phac5g00990 | 530 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 276 | 439 | IPR001650 | - | |
Phac5g00990 | 530 | Coils | Coil | 504 | 524 | - | - | |
Phac5g00990 | 530 | Pfam | DEAD/DEAH box helicase | 86 | 254 | IPR011545 | GO:0003676|GO:0005524 | |
Phac5g00990 | 530 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 92 | 265 | IPR014001 | - | |
Phac5g00990 | 530 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 129 | 420 | IPR027417 | - | |
Phac5g00990 | 530 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 211 | 219 | IPR000629 | - | |
Phac5g00990 | 530 | SMART | helicmild6 | 319 | 400 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac5g00990 | Phac-Chr5 | 11470570 | 11479123 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac5g00990 | 61 | 413 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 32.295 | 8.13e-54 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac5g00990 | K14778 | - | gmx:100804060 | 767.303 |