Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00988 ATGGCTCCAAGGGACAGAAACACCGCACTCGCCGGACCCGGCCCAAGCCCAACACAGGCCCACAAAGAGATCCGCTACAGAGGCGTCAGGAAACGCCCTTGGGGCCGCTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCACGAGCCTACGACACCGCTGCGCGCGAGTTCCGAGGCGCCAAAGCCAAGACCAATTTCCCCACACCTTCCGAGCTTCTCGTAAACAACCATAGCAGCAGCAACAACAACAACGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTCTTCCTCTCCGCCGCCGCCGCCGCTCCTTGACCTCACGCTCACCCCTCTGTCCGCCGCGGTCCTGCCAGTGGCACGTCCGGTTCTCTTCTTCGATGCCTTCGCGCGTGCAGACGCCGTGGTCGCCGTCGGCCGCCGCGACACGTGTGGCTTCGGACGTCCGGTCTCCGATTTCCGTCGCAGCGACTCAAATTCCGAGCGACGCGCGCTCCTGGATCTCGATCTCAACGTGCCTCCTCTTCCCGAGGTTGCGTGA 585 0.6496 MAPRDRNTALAGPGPSPTQAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGAKAKTNFPTPSELLVNNHSSSNNNNARSPSQSSTLDSSSPPPPPLLDLTLTPLSAAVLPVARPVLFFDAFARADAVVAVGRRDTCGFGRPVSDFRRSDSNSERRALLDLDLNVPPLPEVA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00988 194 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Phac5g00988 194 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Phac5g00988 194 MobiDBLite consensus disorder prediction 83 109 - -
Phac5g00988 194 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 MobiDBLite consensus disorder prediction 1 27 - -
Phac5g00988 194 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Phac5g00988 194 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 145 - -
Phac5g00988 194 MobiDBLite consensus disorder prediction 76 117 - -
Phac5g00988 194 FunFam Ethylene-responsive transcription factor 2 25 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00988 Phac-Chr5 11443970 11446407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00988 13 142 AP2-EREBP Transcription Factor Family AT3G15210 63.514 1.03e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac5g00988 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00988 K09286 - gmx:100813652 249.595