Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00966 ATGGATCAAATAACGGATTCAGAGATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAACCACAAACATCTCGCAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTGCCAGATGCTTATGACAATGCTAGGGTGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCAGCTGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGCGTTTTCCCTCTGCCTCTAAATCACAGAGCCTCTGATCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCTTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACACACCACTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCCATTATGGTGCATGACCATAATCATTTGATTCATGGAAATTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCATGGTTGGACCAGCAGATGAACGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGGACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGCTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCACCCAGCACTGCCTATGCAAGGAGTAAGAGGCCACAATATCAACTTTCACCCTGCAGTAAGTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGTGGTGTTGCTATCCCAGCACAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCAGCTGGCCTCCGGATTTACCGACCTCATAGAGGGGCTGTGCCTGAAACAACTCTTGGACATCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGATCACCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTATCAGAGGAAACAATTACAAATCAATTGAAAACAAAATCTTATTCAACAAATGCTGCTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAATGGCTGGTGGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCATGGAAGGAAGGATGTATAG 1587 0.4398 MDQITDSEMDQQRRGYHHSEPCILTRGTTNISQPNNMHAMVRASGNTTNVDSHFLPDAYDNARVYGVTQYNGIQHPHNLDMGVPAAANLYYSGINPSSGAGVFPLPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARHTTDGVAMMDAAPFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQMNGNNNDGHTTPWNQSLPMPYVQGPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPALPMQGVRGHNINFHPAVSAASFRVPINPSRGVAIPAQPGFELGPRHVGPAPSAGLRIYRPHRGAVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITNQLKTKSYSTNAAGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTHGRKDV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00966 528 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Phac5g00966 528 FunFam E3 ubiquitin ligase BIG BROTHER 436 521 - -
Phac5g00966 528 Pfam Ring finger domain 474 517 IPR001841 -
Phac5g00966 528 CDD RING-H2_RNF24-like 474 520 - -
Phac5g00966 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 122 521 IPR045191 GO:0061630
Phac5g00966 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 521 IPR013083 -
Phac5g00966 528 SUPERFAMILY RING/U-box 469 521 - -
Phac5g00966 528 SMART ring_2 476 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00966 Phac-Chr5 11040516 11044623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00966 393 521 C3H Transcription Factor Family AT2G15530 46.667 8.38e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00966 K19041 - gmx:100800642 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00966 5 11040516 11044623 Phac5g00966 5 11040516 11044623 ECH