Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00938 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCTTCCGTTTCCCGGAGAGGTCGCTATTCCGACCACGGCAGTGCTCGTTCACTTCCCGGCGACGGTTTCTGGTGACTGCATCCGAAAGGAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCGGGCAAGAGCCGCCTGGCATTGGAACTAGCTAAGCGCCTAAACGGCGAAATCGTCAGTGCTGATTCCGTTCAGGTGTATCGGGGGCTTGATGTTGGATCTGCAAAGCCTTCCCCAGATGAAAGAAAGGAGGTACCGCATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCATGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTCTCCAGAGATTATATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAGAGATGACTGGGATACAGCTGTACAGTTGGTGGTAAAAGCAGGTGATCCAAAGGCTCAATTTTTAGCAGTGAATGATTGGTATCGATTACGGCGTAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCGTTTCGGGTACCATATGATTCTTTCAGGGAACAGAGTGAATGTAGCGTTGCTGAGGTTTCGGAGTCATCTTATATGAACACTGGAATGGAAGAAACCAGCTCATCAGAGTTAGACTATGAGTTTATGTGCTTTTTCCTTTCTAGTCATAGACTTGACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTTTTAGGAAGGGATGGGATTTTGTCCGAGGCTCAGTGGCTTCTTGATACCGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCACGGGGGTCAGAGTTCTGTTGCAGAATTTTACAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTCGCCAAACGGCAGTTGACATGGTTTCGTAATGAAAGCATATACCAGTGGCTTGATGCTTCTAAACCTCTGGAAACCATTCTCAGTTTCATTAATGGCGCATACCATGACTGGAATGGAAGTCTTCTTGTGCCTGCACACCTAAGAATGTCGAGAGATATTTCTAATCGCCGAGAAGCTACACAACTAAAGTCTTATCGCACCAAAAATAGGCATTTTGTGAAGGGGGAAGATTGCTCTCATATTCTTAACTGGATAAGCAAGACACAAAGGGAGAAGAACAACACTAAGGTTGTCACACCATATCAAAGGTTATCTGACTTTATTTGA 1392 0.4397 MINNGVCTLRTCFRFPERSLFRPRQCSFTSRRRFLVTASERKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARHATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEIISEVNQELAELQRRDDWDTAVQLVVKAGDPKAQFLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQSECSVAEVSESSYMNTGMEETSSSELDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREHGGQSSVAEFYKFLFEFQKASRNFAKRQLTWFRNESIYQWLDASKPLETILSFINGAYHDWNGSLLVPAHLRMSRDISNRREATQLKSYRTKNRHFVKGEDCSHILNWISKTQREKNNTKVVTPYQRLSDFI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00938 463 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 376 IPR039657 -
Phac5g00938 463 Gene3D - 44 437 IPR027417 -
Phac5g00938 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 355 IPR027417 -
Phac5g00938 463 Hamap tRNA dimethylallyltransferase [miaA]. 47 383 IPR018022 GO:0008033
Phac5g00938 463 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Phac5g00938 463 Pfam IPP transferase 80 366 - -
Phac5g00938 463 Gene3D - 155 226 - -
Phac5g00938 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 176 IPR027417 -
Phac5g00938 463 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00938 Phac-Chr5 10546962 10555582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00938 50 357 C2H2 Transcription Factor Family AT2G27760 26.168 2.28e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00938 K00791 - gmx:100808814 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac5g00938 5 10546962 10555582 Phac5g00938 5 10546962 10555582 ECH