Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00831 ATGATAATTGTCACCGGACTCAGGGATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTTCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTACTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATTACCCTATTCATACGGCTCAAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAATCGGCTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTTAGTGCGCACGACAACTCCTCCACATTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGAATTGGCAATGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 798 0.4035 MIIVTGLRDMDAMSEGNIFWPNMFRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHYPIHTAQTPSLEIATNDPQSYHDIARSRIGYRFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNPSSTSLVRTTTPPHWRNFPPQAFLQDDDVPWLGDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSEEVASEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00831 265 CDD RING-H2_RNF24-like 215 261 - -
Phac5g00831 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 262 IPR045191 GO:0061630
Phac5g00831 265 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Phac5g00831 265 Pfam Ring finger domain 216 258 IPR001841 -
Phac5g00831 265 SMART ring_2 217 257 IPR001841 -
Phac5g00831 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 262 IPR013083 -
Phac5g00831 265 SUPERFAMILY RING/U-box 210 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00831 Phac-Chr5 8676897 8678286 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00831 153 262 C3H Transcription Factor Family AT2G15530 47.273 1.41e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00831 K19041 - pvu:PHAVU_011G149000g 442.58