Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00830 ATGATAACTGTCACCGGACTCAGGAATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTACTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATTACCCTATTCATACGGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAATCGACTACAGATTTCTCCATTTGCAGTATCAAGCACAGCCTGCGCAAGGGATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCACACGACAACTCCTCCACACTGGAGGAAGTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTCGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAATGTAGGCACAAGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAAATTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATACGAACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 780 0.4038 MITVTGLRNMDAMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHYPIHTEIATNDPQSYHDIARSRIDYRFLHLQYQAQPAQGMRGHSIDFHPPLTLPTNPSSTSSVHTTTPPHWRKFPPQAFLQDDDVPSLGDHDSDMHLDIEDMSYEELLELGERIGNVGTSLLDEIIARQMKTKNYLLPNNSEEVASEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00830 259 CDD RING-H2_RNF24-like 209 255 - -
Phac5g00830 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 256 IPR013083 -
Phac5g00830 259 Pfam Ring finger domain 210 252 IPR001841 -
Phac5g00830 259 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Phac5g00830 259 SUPERFAMILY RING/U-box 204 255 - -
Phac5g00830 259 SMART ring_2 211 251 IPR001841 -
Phac5g00830 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 256 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00830 Phac-Chr5 8669303 8670695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00830 147 256 C3H Transcription Factor Family AT2G15530 46.364 9.21e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00830 K19041 - pvu:PHAVU_011G149000g 403.29