Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00829 ATGATAACTGTCACCGGACTCAGGAATATGGATGCAATGAGTGAAGGAAATATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTACCAGATGCTTATGACAAGGAGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGGTTTTCCTATTTCATCTCGTTTGGCTCATAGTTTTTCAGTTGCTCCCCCTAATGCAAGGCACAATGCAATTGGCATCCTTTCACATCCTGCGCAAGAGATGAGAGGACACTCCATCGACATTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCTATGCGCGCAACAACTCCTCCACACTGGAGGAGTTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATTATATTGATATGCACTTGGACATTGAGGACATGTCATATGAGCTTCTTCAATTAGGTGAACGGATTGGCAACGTAGGCACATGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCAGGAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTGTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTTTCCCTTATGCAAATCAGAAGCATTGACTCTTGAATAA 774 0.4031 MITVTGLRNMDAMSEGNIFWPNMCRVAVRENIDSHYLPDAYDKEMVYGRRAFNGVQHQPIHTGFPISSRLAHSFSVAPPNARHNAIGILSHPAQEMRGHSIDIHPPLTLPTNPSSTSSMRATTPPHWRSFPPQAFLQDDDVPWLGDHYIDMHLDIEDMSYELLQLGERIGNVGTCLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVFPLCKSEALTLE* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00829 257 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Phac5g00829 257 SMART ring_2 209 249 IPR001841 -
Phac5g00829 257 Pfam RING-H2 zinc finger domain 203 250 IPR024766 GO:0008270
Phac5g00829 257 CDD RING-H2_RNF24-like 207 253 - -
Phac5g00829 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 62 254 IPR045191 GO:0061630
Phac5g00829 257 SUPERFAMILY RING/U-box 203 253 - -
Phac5g00829 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 254 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00829 Phac-Chr5 8656594 8657998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00829 146 254 C3H Transcription Factor Family AT2G15530 44.545 5.98e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00829 K19041 - pvu:PHAVU_011G149000g 299.286