Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00825 ATGATAACTATCATCGGACTCAGGGATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGCTTTTCCTATTTCATCTGCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCAAACGTCAAATCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGAATGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCTTAATAACTTGGGAGAAGTAGCTTCAGAAGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAATTGGAATTGTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 792 0.3927 MITIIGLRDMDAMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHQPIHTAFPISSAPTPSLEIATNDPQSYHDIARSRSDYRFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNPSSTSSVQTSNPPHWRNFPPQAFLQDDDVPWLNDHDSDMHLDIEDMSYEIGNVGTGLLDEIIARQMKTKTYLLLNNLGEVASEEQENDLCIICQDEYKNKQEIGIVQCGHEYHADCIRTWLHEKNVCPLCKSEALTLG* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00825 263 Pfam RING-H2 zinc finger domain 209 256 IPR024766 GO:0008270
Phac5g00825 263 CDD RING-H2_RNF24-like 213 259 - -
Phac5g00825 263 SUPERFAMILY RING/U-box 208 259 - -
Phac5g00825 263 SMART ring_2 215 255 IPR001841 -
Phac5g00825 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 260 IPR013083 -
Phac5g00825 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 54 260 IPR045191 GO:0061630
Phac5g00825 263 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00825 Phac-Chr5 8554471 8555862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00825 157 260 C3H Transcription Factor Family AT2G15530 39.286 1.65e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00825 K19041 - pvu:PHAVU_011G149000g 437.573