Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00824 ATGATCACTATCACCGGACTCAGGGATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTACATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGCTTTTCCTATTTCATCTAGTTTGGCTCATAGTTTTTCAATTGCTCCCACTAATTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCAACTTACACTTGCAACAAATCCTTCAAGCACTTCTTCAGTGCGCGCGACAATTCCTCCACATTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATTTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGCTTCTTGAATTAGGTGAACGGATTGGAAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGAGAGAAGTAACTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAATTGGAATTCTTCAATGTGGACATGAATATCACGCATATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTACCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 753 0.3891 MITITGLRDMDAMSEGNIFWPNMCRVAVRENIDSHYLLHAYDNGMVYGRRAFNGVQHQPIHTAFPISSSLAHSFSIAPTNYQAQPAQEMRGHSIDFHPQLTLATNPSSTSSVRATIPPHWRNFPPQAFLQDDDFPWLGDHDSDMHLDIEDMSYELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSREVTSEEQENDLCIICQDEYKNKQEIGILQCGHEYHAYCIRTWLHEKNVCTLCKSEALTLG* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00824 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 59 247 IPR045191 GO:0061630
Phac5g00824 250 SUPERFAMILY RING/U-box 195 246 - -
Phac5g00824 250 CDD RING-H2_RNF24-like 200 246 - -
Phac5g00824 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 247 IPR013083 -
Phac5g00824 250 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Phac5g00824 250 Pfam RING-H2 zinc finger domain 196 243 IPR024766 GO:0008270
Phac5g00824 250 SMART ring_2 202 242 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00824 Phac-Chr5 8539336 8540726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00824 139 247 C3H Transcription Factor Family AT2G15530 45.455 3.08e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00824 K19041 - pvu:PHAVU_011G149000g 314.309