Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00823 ATGAGAACTATCACCGGACTCAGGAATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTAGATGCTTATGACAATGGGATGGGGTATGGAAGGAGAGCATTCAATGGACTTCAACATCAACCTATTCATACGGCTTTTCCTATTTCATCTGCTCCAACTCCATCATTAAAGATTGCAATAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGTGCAAGAGATGAGAGGACACTCCATCGACTTTCATTCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACATTGGAGGAATTTTCCTCCTCAAGCCTTTATTCAAGATGATATAATATTGCATTCTCTCTACTTTTGGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGAATTGGACAACAAGAGCTTCTTGAATTAGGTGAACGAATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGATAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTAAAGAACAAGAAAATGATCTTTGCATAATATGTCAGGACATTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 834 0.3933 MRTITGLRNMDAMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMGYGRRAFNGLQHQPIHTAFPISSAPTPSLKIAINDPQSYHDIARSRSDYRFLHPQYQAQPVQEMRGHSIDFHSPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFIQDDIILHSLYFWMFLGWVTMIVICTWTLRTCHMRIGQQELLELGERIGNVGTGLLDEIIARQMKIKTYLLPNNSGEVASKEQENDLCIICQDIGILQCGHEYHADCIRTWLHEKNVCPLCKSEALTLG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00823 277 Pfam RING-H2 zinc finger domain 233 270 IPR024766 GO:0008270
Phac5g00823 277 ProSiteProfiles Zinc finger RING-type profile. 236 270 IPR001841 -
Phac5g00823 277 SMART ring_2 236 269 IPR001841 -
Phac5g00823 277 SUPERFAMILY RING/U-box 229 273 - -
Phac5g00823 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 275 IPR013083 -
Phac5g00823 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 60 274 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00823 Phac-Chr5 8511179 8512570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00823 187 274 C3H Transcription Factor Family AT2G15530 45.263 1.80e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00823 K19041 - pvu:PHAVU_011G149000g 362.459