Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00821 ATGATAACTATCACCGGACTCAGGGATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAAAATCAACCTATTCATACGGCTTTTCCTACTTCATCTGGTTTGGCTCATAGTTTTTCAGTTGCTCCCCCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGACGTGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTAAGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAGTTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACATGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAACATTGACTCTTGGATAA 846 0.4054 MITITGLRDMDAMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQNQPIHTAFPTSSGLAHSFSVAPPPTPSLEIATNDPQSYHDIARSRSDYRFLHPQYQAQPAQDVRGHSIDFHPPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFLQDDDVPWLSDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEVGILQCGHEYHADCIRTWLHEKNVCPLCKSETLTLG* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00821 281 SMART ring_2 233 273 IPR001841 -
Phac5g00821 281 Pfam RING-H2 zinc finger domain 227 274 IPR024766 GO:0008270
Phac5g00821 281 MobiDBLite consensus disorder prediction 130 151 - -
Phac5g00821 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 278 IPR013083 -
Phac5g00821 281 MobiDBLite consensus disorder prediction 128 151 - -
Phac5g00821 281 CDD RING-H2_RNF24-like 231 275 - -
Phac5g00821 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 56 277 IPR045191 GO:0061630
Phac5g00821 281 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Phac5g00821 281 SUPERFAMILY RING/U-box 227 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00821 Phac-Chr5 8490474 8491854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00821 167 278 C3H Transcription Factor Family AT2G15530 46.429 6.39e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00821 K19041 - pvu:PHAVU_011G149000g 474.937