Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00820 ATGATAACTATCACCGGACTCAGGGATATGGATGCAATGACAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGACGTGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGTAATATTGCATTCTCTCTACTTTTGGAGAGCATTCAATGGAGTTCAAAATCAACCTATTCATATGGCTTTTCCTATTTCATCTCCTCCAACCCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGTTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGACGTGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAGTTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACATGTGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 930 0.4226 MITITGLRDMDAMTRSRSDYRFLHPQYQAQPAQDVRGHSIDFHPPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFLQDDVILHSLYFWRAFNGVQNQPIHMAFPISSPPTPSLEIATNDPQSYHDIARSRSDYRFLHPQYQAQPAQDVRGHSIDFHPPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFLQDDDVPWLGDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEVGILQCGHEYHADCIRTWLHVKNVCPLCKSEALTLG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00820 309 SUPERFAMILY RING/U-box 255 305 - -
Phac5g00820 309 CDD RING-H2_RNF24-like 259 305 - -
Phac5g00820 309 MobiDBLite consensus disorder prediction 156 182 - -
Phac5g00820 309 MobiDBLite consensus disorder prediction 158 179 - -
Phac5g00820 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 306 IPR013083 -
Phac5g00820 309 ProSiteProfiles Zinc finger RING-type profile. 261 302 IPR001841 -
Phac5g00820 309 Pfam RING-H2 zinc finger domain 255 302 IPR024766 GO:0008270
Phac5g00820 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 29 306 IPR045191 GO:0061630
Phac5g00820 309 SMART ring_2 261 301 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00820 Phac-Chr5 8486894 8488710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00820 197 306 C3H Transcription Factor Family AT2G15530 48.182 2.97e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00820 K19041 - pvu:PHAVU_011G149000g 377.481