Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00819 ATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGCTTTTCCTATTTCATCTGCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGACATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAGTTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGACATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCACGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAACGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAGTTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACATGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 1329 0.4108 MDAMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHQPIHTAFPISSAPTPSLEIATNDPQSYHDIARSRSDYRFLHPQYQAQPAQDMRGHSIDFHPPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFLQDDDVPWLGDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEVGILQCGHEYHADSPTPSLEIATNDPQSYHDIARSRSDYRFLHPQYQAQPAQDMRGHSIDFHPPLTLPTNPSSTSSVRTTTPPHWRNFPPQAFLQDDDVPWLGDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEVGILQCGHEYHADCIRTWLHEKNVCPLCKSEALTLG* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00819 442 MobiDBLite consensus disorder prediction 291 315 - -
Phac5g00819 442 ProSiteProfiles Zinc finger RING-type profile. 394 435 IPR001841 -
Phac5g00819 442 MobiDBLite consensus disorder prediction 111 132 - -
Phac5g00819 442 CDD RING-H2_RNF24-like 392 438 - -
Phac5g00819 442 Pfam RING-H2 zinc finger domain 388 435 IPR024766 GO:0008270
Phac5g00819 442 SUPERFAMILY RING/U-box 208 238 - -
Phac5g00819 442 MobiDBLite consensus disorder prediction 111 135 - -
Phac5g00819 442 MobiDBLite consensus disorder prediction 291 312 - -
Phac5g00819 442 SMART ring_2 394 434 IPR001841 -
Phac5g00819 442 SMART ring_2 214 239 IPR001841 -
Phac5g00819 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 254 IPR013083 -
Phac5g00819 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 439 IPR013083 -
Phac5g00819 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 267 439 IPR045191 GO:0061630
Phac5g00819 442 SUPERFAMILY RING/U-box 388 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00819 Phac-Chr5 8474618 8479753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00819 330 439 C3H Transcription Factor Family AT2G15530 48.182 5.65e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00819 K19041 - pvu:PHAVU_011G149000g 365.155