Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00798 ATGATAACTATCACCGGACTCAGGGATATGGATGCAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGTAGAATGGCAGTGAGAGAAAATATAGATTCTCATTACTTATTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGCTTTTCCTATTTCATCTACTCCAACTCCTTCATTAGAGATTTTAACAAATGATCCCCAAAGCTATCAAGATATAGCAAGAAGCAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGCACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCGCGACAACTCCTCCACACTGGAGGAATTTTCATCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGGTGAACGGATTGGCAATGTAGGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAAGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAACAGGAAATTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 816 0.3971 MITITGLRDMDAMSEGNIFWPNMCRMAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHQPIHTAFPISSTPTPSLEILTNDPQSYQDIARSRSDYRFLHPQYQAQPAQEMRAHSIDFHPPLTLPTNPSSTSSVRATTPPHWRNFHPQAFLQDDDVPWLGDHDSDMHLDIEDMSYEELLELGERIGNVGTGLLDEIIARQMKTKTYLLPNNSGEVASEEQENDLCIICQDEYKNKQEIGILQCGHEYHADCIRTWLHEKNVCPLCKSEALTLG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00798 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 56 268 IPR045191 GO:0061630
Phac5g00798 271 CDD RING-H2_RNF24-like 221 267 - -
Phac5g00798 271 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Phac5g00798 271 SUPERFAMILY RING/U-box 217 267 - -
Phac5g00798 271 SMART ring_2 223 263 IPR001841 -
Phac5g00798 271 Pfam RING-H2 zinc finger domain 217 264 IPR024766 GO:0008270
Phac5g00798 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 268 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00798 Phac-Chr5 7942089 7943480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00798 159 268 C3H Transcription Factor Family AT2G15530 48.182 2.40e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00798 K19041 - pvu:PHAVU_011G149000g 454.521