Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00797 ATGAGAGCACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCACGCGACAACTCCTCCACACTGGAGGAATTTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACCATGATAGTGATATGCACTTGGACATTGAGGACATGTCATATGATGTATTTTCTTATGAATGTGGATTGGCTATGAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAAGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATAAATATAAGAACAAACAGGAAATTGGAATTCTTCAATGTGGACATGAATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAA 456 0.3904 MRAHSIDFHPPLTLPTNPSSTSSVHATTPPHWRNFPPQAFLQDDDVPWLGDHDSDMHLDIEDMSYDVFSYECGLAMRQMKTKTYLLPNNSGEVASEEQENDLCIICQDKYKNKQEIGILQCGHEYHADCIRTWLHEKNVCPLCKSEALTLG* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00797 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 148 IPR013083 -
Phac5g00797 151 MobiDBLite consensus disorder prediction 12 29 - -
Phac5g00797 151 SUPERFAMILY RING/U-box 97 147 - -
Phac5g00797 151 SMART ring_2 103 143 IPR001841 -
Phac5g00797 151 MobiDBLite consensus disorder prediction 1 29 - -
Phac5g00797 151 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Phac5g00797 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 18 148 IPR045191 GO:0061630
Phac5g00797 151 Pfam RING-H2 zinc finger domain 97 144 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00797 Phac-Chr5 7932360 7933126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00797 51 148 C3H Transcription Factor Family AT2G15530 34.545 5.36e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00797 K19041 - pvu:PHAVU_011G149000g 255.758