Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00768 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTCTCCGACTCATCCTCTCGCTCCTCATCCCCCTCCTCCTCTCGCTCATCTCGTTCTCGCTCCCGTTCTCCCTCGCGCTCCAGATCCTTCTCATCCTCCTCCTCCTCTCCCTCCCGCAGCTCCCGTAGCCGCAGCCCTCCGCCGCAGAGGCGCAAAAGTCCAGCTGAAGCAGCAGCAGCAGTTAGGCGTGGTCGGTCGCCTCCACCTCAGTCCAAGAGAGTTTCACCTCCCCCAAGGAAACCTTCTCCTGTACGAGAATCACTTGTTCTTCATGTGGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACAAGAGAGGATGCTGAAAAAGCATTATTGTTCATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTTTACCTCCTAGGCAGAAAGTTTCACCACCCCCAAAGGCTTCTGTCTCAGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCAGAGAGAATCTCCTCGAAGAAAGCCTCCTTCACCACGGAGGAGGTCTCCTGTACCTCGAAGAGCTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGATTAGACTCTCCTTATCGTCGTGGAGGAGACACCCCTCCTAGGAGGCGACCTGTGTCCCCTGGAAGAGGCCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGATCTCACCTAGAAGGATGCGTGGAAGCCCAGGGAGACGACGTTCACCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGACGAGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGACGCACTCGCTCTCCAATACGTAGGTCGGCACGTTCACGGTCAAGGTCATTCTCACCTCGCAGAGGTAGGCCACCTGTTAGGCGTGGGAGGTCATCATCGTACTCAGATTCACCAAGTCCTCGCAAGGTTTCCCGTAGATCAAAGAGTCGTAGTCCAAGAAGGCCTTTGAGAGGAAGAGGAAGTAGCAATAGTAGCAGCAGCAGTTCACCACCACCACCACCACCAGCTCGCAAACCATAG 1254 0.5431 MAKPGRGRRSPSGSVSDSSSRSSSPSSSRSSRSRSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRKSPAEAAAAVRRGRSPPPQSKRVSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTREDAEKALLFMDGAQIDGNVIKARFTLPPRQKVSPPPKASVSAPKRDTPRTDNASADVDKDGPKRQRESPRRKPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARISPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPPARKP* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00768 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 260 384 - -
Phac5g00768 417 FunFam Serine/arginine-rich splicing factor SR45 3 187 - -
Phac5g00768 417 MobiDBLite consensus disorder prediction 223 238 - -
Phac5g00768 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Phac5g00768 417 MobiDBLite consensus disorder prediction 294 365 - -
Phac5g00768 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Phac5g00768 417 SUPERFAMILY RNA-binding domain, RBD 88 186 IPR035979 GO:0003676
Phac5g00768 417 MobiDBLite consensus disorder prediction 202 222 - -
Phac5g00768 417 MobiDBLite consensus disorder prediction 11 62 - -
Phac5g00768 417 MobiDBLite consensus disorder prediction 1 100 - -
Phac5g00768 417 SMART rrm1_1 103 176 IPR000504 GO:0003723
Phac5g00768 417 MobiDBLite consensus disorder prediction 242 272 - -
Phac5g00768 417 CDD RRM_RNPS1 104 176 IPR034201 -
Phac5g00768 417 Gene3D - 6 186 IPR012677 -
Phac5g00768 417 MobiDBLite consensus disorder prediction 179 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00768 Phac-Chr5 7561095 7565950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00768 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.39e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00768 K14325 - gmx:100783566 270.011