LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac5g00638	ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTGCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCCAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAGTTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCCGCTTTAGAACTGCAACGAAATACTGCTTCCTCCTCAGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAAAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCGGCCACTAACTTAAAGGGTGGTATTGTACCTCATCAAATTCCTGACATGGGGGTGTTGAAGGAGTTTGGTTCCCCTCTCGGTTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGACCAAATTGACCTTCAGCACAACATGGAGAAGCCACCCGTTGATCATGGATTTATGTCAATCAATGATAGTTTGTGTCTGGGGAAGAAGAGATCCAACCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGATCTGGGAGGGCCAGCCTCATCTTGCCTTGGTCCTCAAGATGACCCTTTCAAAGGCGACCATATTCAGATTACACCACAAGGATCATTGGATAGAGGCAGCACTGACATTGATCCCATGTCAGATATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAGCTGTAGTGGGGGAAAAAAAGTTTGATACATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCTCCTCTTCAGGCGGAAAGGATGAGTCCTATGATCAGTACTGGTACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA	1143	0.4681	MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGGIVPHQIPDMGVLKEFGSPLGFSSFQDLENIYGGDQIDLQHNMEKPPVDHGFMSINDSLCLGKKRSNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDHIQITPQGSLDRGSTDIDPMSDIYDSKPVLQGEAVVGEKKFDTSMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG*	381

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac5g00638	380	MobiDBLite	consensus disorder prediction	341	355	-	-
Phac5g00638	380	MobiDBLite	consensus disorder prediction	1	20	-	-
Phac5g00638	380	FunFam	Myb family transcription factor	34	92	-	-
Phac5g00638	380	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	12	192	IPR044848	GO:0003700
Phac5g00638	380	Pfam	MYB-CC type transfactor, LHEQLE motif	134	179	IPR025756	-
Phac5g00638	380	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	35	90	IPR006447	GO:0003677
Phac5g00638	380	SUPERFAMILY	Homeodomain-like	34	90	IPR009057	-
Phac5g00638	380	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	32	92	IPR017930	-
Phac5g00638	380	Pfam	Myb-like DNA-binding domain	38	86	IPR001005	-
Phac5g00638	380	Gene3D	-	34	92	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac5g00638	Phac-Chr5	5541093	5544147	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac5g00638	4	380	G2-like Transcription Factor Family	AT1G79430	57.033	1.97e-123	358

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Phac5g00638		Myb_DNA-binding	2.1e-06	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac5g00638	-		-	gmx:100807793	682.945

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