Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00633 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAAAGGAAGATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGAGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGATACTGGAAAGCTACAGGGAAAGATAGACCAGTGCACTCTCAAAAGAAGCTAGTTGGCATGAAGAAGACATTGGTATACTATAAAGGTAGAGCACCACATGGCCTTAGAACGAACTGGGTTATGCATGAATACCGCTTGATTGAATCACTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCAGCGAAACCCAGTAAAGAAGAAGAACAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGATAGGAGAAGACTCAAGTGGCACTGAGTTTTCTAGAGAAATGGAAACCGTGGAGGAGAAAATTCTGAATCATGAATACCCTAAATTTCCCTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGTGATGAAGCAAACAGTGCAACTAATTCGTATACAATGGGAATAGGTTATGCCAGCAATCTATTTCAGGATGTGGAAATACCTTCTTATGGTGGCATGCATTATCAACTCCCTTACACACCTTTGGTGCTGGAAGACTTCCCTCAACTTACATTGCCGGAGACAAAGTCAACAAAGCCAGAAGTGAGTGATCCCTGCATGTTATATGACAGATACAGGGACTGTATGAATGGAACGCTAGAAGAGATAATCTCTTTGTGTTGCACTCAAGATAATTCCCTCCCTTTTCCCATGCTAGAATGA 1041 0.4294 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKLVGMKKTLVYYKGRAPHGLRTNWVMHEYRLIESLPGAALSSLKDSYSLCRIFKKTIQIPAKPSKEEEQAEDAKKESMWISEEQMIGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGIGYASNLFQDVEIPSYGGMHYQLPYTPLVLEDFPQLTLPETKSTKPEVSDPCMLYDRYRDCMNGTLEEIISLCCTQDNSLPFPMLE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00633 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Phac5g00633 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 207 - -
Phac5g00633 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Phac5g00633 346 FunFam Nac domain-containing protein 86 15 160 - -
Phac5g00633 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Phac5g00633 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00633 Phac-Chr5 5452445 5457066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00633 1 340 NAC Transcription Factor Family AT1G54330 52.199 2.67e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac5g00633 NAM 6.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00633 - - gmx:100808325 669.077