Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00616 ATGCCAACTTTGATTTCATCTAGGTTTCTTTTGCTTGTTGGGGAGTCACTCCACTTGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTGAAGTGTATGAGCCAGGTGGAACCTAATCATGCTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTGAAACTGAGAATAGATGCACATCTAATAAGGTTAAGCCATTTGGTTCACCCTCTGAGAATCTCAAGAGCAAAGAAAAGCCCTTTGGCATTAATGAGAAGAAGAAGAAAGCAGTTAGGGTTGTAGAAAAACAGCAAATAGAGTTTGCCCCTTTTGCTGCAAAGTCATTTCCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGACTACAGAAGGAGGGTTTTACTGTTCCGACTGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTAAACAACCGCGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACACTAGCTTATCTGCTTCCTATTCTCTCGGTTGTTGGACCACTGAGGGGGAAAGGTGGTGAGGATGGTGATGAGAATGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAAGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCCAACCGAACCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCAGAGCTAAGTGCATCCGGGAAACTTCGCACTCATGGATGTCGATATTTGGTATTGGATGAAGTTGATGAACTCTTGTCGTTCAATTTCCGGGAAGACATGCACCGGATATTGGAACATGTAGGGAGGAAATCAAGTGCAGACCCAAACTCAAATGCTGGAAAGAGTGAGCGTCAGTTAATCATGGTTTCTGCAACTGTGCCCTTTTCTGTTGTAAGGGCAGCAAGAAGCTGGGGTTGTGACCCTCTTCTTGTCCAAGCTAAGAAAATTGTCCCGCTTGAAACTGTCTCTCCCTCTGAACCTGTCAGTTTATCCCGGTCTTCTTTGCCCAATTCGGCTGTGCCATCTCAAGCAGCGGTAGAGAGTCTGCCTCCTGCGCTGAAACACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGTGGAGTTACATGGGGATCTAGGGAAGCTTGCGAGATCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAATGAATTGTCAGCAAGGGGCTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTCGACTTACCAACAGATTCAATTCATTATGCGCACCGGGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAATTGAAGAAGCAGCTGGGAATACCAATTGCACCCTGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAGAGGAAACAGTTAGCACTTCTAGCAGTTGA 1665 0.4577 MPTLISSRFLLLVGESLHLRRALATSRSVLLHTSVKCMSQVEPNHASLTLSSIGFQTETENRCTSNKVKPFGSPSENLKSKEKPFGINEKKKKAVRVVEKQQIEFAPFAAKSFPELGLPHVLIERLQKEGFTVPTEVQSAAVPTILNNRDVIIQSYTGSGKTLAYLLPILSVVGPLRGKGGEDGDENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRKSSADPNSNAGKSERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIVPLETVSPSEPVSLSRSSLPNSAVPSQAAVESLPPALKHYYCVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLKKQLGIPIAPCDFSEGKLLVTEEEETVSTSSS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00616 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 541 IPR001650 -
Phac5g00616 554 CDD DEADc 122 341 - -
Phac5g00616 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 340 IPR014001 -
Phac5g00616 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Phac5g00616 554 Gene3D - 75 342 IPR027417 -
Phac5g00616 554 SMART ultradead3 130 360 IPR014001 -
Phac5g00616 554 Pfam DEAD/DEAH box helicase 135 326 IPR011545 GO:0003676|GO:0005524
Phac5g00616 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 523 IPR027417 -
Phac5g00616 554 Gene3D - 379 540 IPR027417 -
Phac5g00616 554 CDD SF2_C_DEAD 382 511 - -
Phac5g00616 554 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 90 540 - -
Phac5g00616 554 SMART helicmild6 421 502 IPR001650 -
Phac5g00616 554 Pfam Helicase conserved C-terminal domain 399 502 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00616 Phac-Chr5 5018321 5020639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00616 112 530 Eukaryotic Initiation Factors Gene Family AT3G19760 24.344 2.13e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00616 - - gmx:100812968 929.858