Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00588 ATGGCCGCTGCCGACTCCTCCGCCGCCGCTCCTCTGCGCCAGCTCTCTCAGAAGGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACGAAAAACTGCGACTTCCAAATGGAACGCTACGTCTTCAAGCGCCGCACTGACGGTATATACATAATTAACCTTGGCAAAACATGGGAGAAGCTCCATCAAGCTGCTAGGATTATTGTTGCCATTGAGAATCCACAGGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAGTACACCGGGGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCACGTCTTCTAATTTTGACTGATCCAAGAACAGATCATCAGCCTATTAAGGAAGGTGCTCTTGGCAATATTCCCACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCGGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTATTTTGGCTTTTAGCTCGGATGGTGCTGCAGATGCGGGGTACTATTCGTCCGGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCTAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTGACTTCAATGATGCTGGCATTAGCAGCTTCCCTGCCAACAGACAATGGCCTGGTGCACTTGACCAAGCTTGGACCGAAGAAGCTCCACAACCAATCCCAGCAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGTCTGTTCCTGCACCGGCTCCCGCTGCCGCACCGGCCCCACAAACTGTTCCTGCTACTGGCTGGGACTAA 921 0.5071 MAAADSSAAAPLRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLHQAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDFNDAGISSFPANRQWPGALDQAWTEEAPQPIPAVPTNWTPETAAAGDWGESVPAPAPAAAPAPQTVPATGWD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00588 306 Gene3D - 21 226 - -
Phac5g00588 306 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 Hamap 40S ribosomal protein SA [rps-0]. 9 260 IPR027498 GO:0003735|GO:0006412|GO:0015935
Phac5g00588 306 MobiDBLite consensus disorder prediction 263 306 - -
Phac5g00588 306 PANTHER 40S RIBOSOMAL PROTEIN SA 13 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Phac5g00588 306 FunFam 40S ribosomal protein SA 21 227 - -
Phac5g00588 306 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Phac5g00588 306 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00588 Phac-Chr5 4683261 4685972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00588 4 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.171 1.10e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00588 K02998 - gmx:100786575 532.332