Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac5g00565 ATGGCGACGGCGGCGGAGCCCGAAGCGAAGACCTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTCACGCTCCCTCCCTCGCCTCTCCTCTGCCCGCACTGCCACACCCACTTCCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCACCGCTCTTCGACGTCCTCTTCCAGGACGCGCTCTTGCTGCTCTCCCCCAAGCCCCTTCCCACCAAACCCCGCCCTCTCCCCTCCGTCCACGTCACCCCCTCGCTCCTCTCCGCGCTCGACCCCAGCGGCGTCGTTTTCTGCGCCGTCTGCAAAGACCAAATTGCCCTCGACGCCGACGCCAAACAGTTACCCTGCAAACACCTCTACCACGCCGACTGCATCACGCCGTGGCTCGAGCTCCACGCCTCGTGCCCGCTGTGCAGGCTCCGCCTGGAGGAAGAAGCGGCGGAGGAGGAGGAAGAGGAGGGTGACGGCGTGGTCACGGAGATCCGGCGGGAGCTGATCGCGAGGCTGGCGGAGTTGACGGAGGAGGATTTCTACGGGCTGAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCGCCCGCAAATTGGCGAACCTCGAGTGTTCGTAGAGGTGTTAAATGAGAAAATTTATCATATAGGAGCCTAA 678 0.6268 MATAAEPEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPFSQNDAESPLFDVLFQDALLLLSPKPLPTKPRPLPSVHVTPSLLSALDPSGVVFCAVCKDQIALDADAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEEAAEEEEEEGDGVVTEIRRELIARLAELTEEDFYGLRTTLSHIASRHALIEENENRPQIGEPRVFVEVLNEKIYHIGA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac5g00565 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 160 IPR013083 -
Phac5g00565 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 144 - -
Phac5g00565 225 SMART ring_2 101 141 IPR001841 -
Phac5g00565 225 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Phac5g00565 225 SUPERFAMILY RING/U-box 96 146 - -
Phac5g00565 225 Pfam Ring finger domain 101 142 IPR001841 -
Phac5g00565 225 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac5g00565 Phac-Chr5 4438695 4441041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac5g00565 5 63 C3H Transcription Factor Family AT3G60080 47.692 1.42e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac5g00565 K11982 - gmx:100775530 296.204